BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936780

Length=1441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29636.1 | Symbols:  | transferase-related | chr3:11467964-1...   285    8e-76


> AT3G29636.1 | Symbols:  | transferase-related | chr3:11467964-11468857 
REVERSE LENGTH=600
Length=600

 Score =  285 bits (154),  Expect = 8e-76
 Identities = 211/239 (88%), Gaps = 2/239 (1%)
 Strand=Plus/Plus

Query  681  ATGCAATCAATATGGTACTTCTCCG-ATGAAAAAGATGGCAAGAGAACCCTAAGGCCGCC  739
            ||| ||||||| || |||||||  | ||||||||||||||||||||||||||| ||||||
Sbjct  1    ATGGAATCAATGTGCTACTTCT-TGTATGAAAAAGATGGCAAGAGAACCCTAAAGCCGCC  59

Query  740  TCCAACAGGGCATATCAGTACCGATCTTGTTCGGATCACACTCCAGCTGACTCAGGAGAA  799
            |||||  ||| ||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct  60   TCCAAGGGGGGATATCAGCACCGATCTTGTCCGAATCACACTCCAGCTGACTCAGGAGAA  119

Query  800  AGTCAAGAACCTTAAGGAGCAAGCCAAGCGAGAGTCAGCTCGCTCTCTTCATGATCTTTA  859
            ||||||||| |||||||||| |||||||| ||| ||||| |||||||| |||||||| ||
Sbjct  120  AGTCAAGAAACTTAAGGAGCGAGCCAAGCAAGAATCAGCGCGCTCTCTACATGATCTATA  179

Query  860  TTTGTCAACATTCGTCGTCACAACCGCTTATCTCTGGAGCTGCCTGGTAAAGACGCGCG  918
            ||| ||||| |||||||||||||  || |||||||||||||| ||||| ||| ||||||
Sbjct  180  TTTCTCAACGTTCGTCGTCACAATGGCCTATCTCTGGAGCTGTCTGGTGAAGGCGCGCG  238


 Score =  178 bits (96),  Expect = 1e-43
 Identities = 137/155 (88%), Gaps = 10/155 (6%)
 Strand=Plus/Plus

Query  993   GAGAGGTACTTTGGGAACTGTGTGTTCCCTATTGGTTGCTTTGGATACAAAGCAAAGCCA  1052
             |||||||||||||||||||| |||||||||||| |  |   |   ||||||||||||| |
Sbjct  238   GAGAGGTACTTTGGGAACTGGGTGTTCCCTATT-G--G---T---TACAAAGCAAAGCTA  288

Query  1053  TTTTTGGGAAGAGACGGTTTCATCAACGCTATCGAGATTCTTGGAGACTCAGTCAAAAGT  1112
             || | |||||||||||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct  289   TTGTCGGGAAGAGACGGTTTCTTAAACGCTATCGAGATTCTTGGAGATTCAGTCAAAAGT  348

Query  1113  TTGGGTTCACAAGGAATTGAAACACTTTGCGAGTT  1147
             ||||||||||||||||||||| ||||| |||||||
Sbjct  349   TTGGGTTCACAAGGAATTGAAGCACTT-GCGAGTT  382


 Score =  178 bits (96),  Expect = 1e-43
 Identities = 114/123 (93%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  1234  ATTTCGGATGGGGTAAACCCGTAAACCATGAGATTGTGTCCATTGACCGGTATGCAGCGT  1293
             |||| || |||| ||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct  383   ATTTTGGGTGGGTTAAACCCGTAAACGACGAGATTGTGTCCATTGACCGGTATGCAGCGT  442

Query  1294  TCACGATATCGGAGAGGAGGGATGAGATAGGTGGCGCTGAGATCGGTTTGTGTTTGAAGA  1353
             |||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct  443   TCACGATATCAGAGAGGAGGGATGAGATCGGTGGCGCTGAGATAGGCTTGTGTTTGAAGA  502

Query  1354  AGA  1356
             |||
Sbjct  503   AGA  505



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 71033771175


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5