BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936784
Length=320
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29635.1 | Symbols: | HXXXD-type acyl-transferase family pr... 344 3e-94
> AT3G29635.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr3:11465851-11467227 REVERSE LENGTH=1377
Length=1377
Score = 344 bits (186), Expect = 3e-94
Identities = 242/268 (90%), Gaps = 8/268 (3%)
Strand=Plus/Plus
Query 7 GAAACAATTTGCGAATGGTATACATTGATGGAACAAAGAGTGTGAAA-CTGAGTACACAG 65
|||||||||||||||| | |||||| |||||||||||||||||||| | | ||||||||
Sbjct 1096 GAAACAATTTGCGAAT--TGTACATTAATGGAACAAAGAGTGTGAAACCAG-GTACACAG 1152
Query 66 -TCTGGATCCATTACCGGTTCGAACCAGTTTGGGCTATACGGATCAGATTTCGGATGGGG 124
| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1153 AT-TGGATCCATTGCCGGTTCGAACCAGTTTGGGCTATACGGGTCAGATTTCGGGTGGGG 1211
Query 125 AAAACCCTGGAACTGTGAGATTGTGTCCATCGACCGGAACGAGGCGTTTTCTATGTCGGA 184
|||||| || ||| ||||||||| |||||| ||||| |||||||||||||| ||||||||
Sbjct 1212 AAAACCATGTAACAGTGAGATTGCGTCCATTGACCGAAACGAGGCGTTTTCGATGTCGGA 1271
Query 185 GAGGAGGGAT-AAGCCCGGAGGTTTGGAGGTCGGCTTGTGTTTGAAGAAATGTGAGATGG 243
|||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1272 GAGGAGGGATGAA-CCCGGAGGTGTGGAGATCGGCTTGTGTTTGAAGAAATGTGAGATGG 1330
Query 244 ATATATTTATTTCTCTATTTCAAAATGG 271
| |||||||||| ||| |||||||||||
Sbjct 1331 ACATATTTATTTATCTGTTTCAAAATGG 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14879253704
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5