BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936786
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29670.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1838 0.0
> AT3G29670.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr3:11527872-11529350 FORWARD LENGTH=1479
Length=1479
Score = 1838 bits (995), Expect = 0.0
Identities = 1245/1366 (91%), Gaps = 16/1366 (1%)
Strand=Plus/Plus
Query 16 TCACCAATGACGCTACAAATCATTGAGACTACCGGAGTCACCCCAGCCGCCGATTCGGAC 75
||||||||||||||||| ||||||||||| || |||||| ||| || |||| | ||
Sbjct 75 TCACCAATGACGCTACACGTCATTGAGACTGCCCGAGTCA-CCC--CCACCGA--C-TAC 128
Query 76 TCGGTCCTTAACTCAGCCAACTCTCTCAC-AA-TCCCTTTAACTTTCTTCGACCTTCCAT 133
|| ||| | ||||||||||||| | ||| || | |||||||||||||||||||||||||
Sbjct 129 TCAGTCATCAACTCAGCCAACT-T-GCACAAACTTCCTTTAACTTTCTTCGACCTTCCAT 186
Query 134 GGCTACTATTCCACCCAGTCAAGCGAATCTTCTTCTACAAACTCACCGAGTCGACTCGTG 193
||||||||||||| |||||||| || ||||||||||| | ||||||||||| |||||||
Sbjct 187 GGCTACTATTCCAGCCAGTCAAAAGAGTCTTCTTCTACGAGCTCACCGAGTCTACTCGTG 246
Query 194 AGCATTTCCACTCCATCATCCTCCCTAAGCTCAAGCACTCTCTGTCCCTTGTCCTCCGTA 253
| |||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||
Sbjct 247 ACCATTTCCACTCCATTATCCTCCCTAAGCTCAAGGACTCTCTGTCCCTTATCCTCCGTA 306
Query 254 ACTATCTTCCTCTCACCGGCCACATCACTTGGGAGCCAGACGAGCCTAAGCCTAGCATAG 313
||||||| |||||||| ||||||||||||||||||||| ||||||| || || ||||||
Sbjct 307 ACTATCTCCCTCTCACTGGCCACATCACTTGGGAGCCAAACGAGCCAAAACCGAGCATAA 366
Query 314 TCGTCTATCCAAACGACGCCGTTTTAGTTACTATAGCCGAGAGTGAAGCTGACTTTTCTC 373
|||||| ||||| || |||||| || ||||||||||||||||| |||||||||||||
Sbjct 367 TCGTCTCGGAAAACGGCGTCGTTTTGGTGACTATAGCCGAGAGTGACGCTGACTTTTCTC 426
Query 374 ATCTTTCCAGTTATGGACAACGTCCTTTGTCCGAGTTACACGCCTTGCTTCCCAAGTTAC 433
|||||||| |||||||||| ||||||||||| |||||||| |||||| ||||||||||||
Sbjct 427 ATCTTTCCGGTTATGGACAGCGTCCTTTGTCAGAGTTACATGCCTTGGTTCCCAAGTTAC 486
Query 434 CGGTTTCTGATGACTCAGCGACCGCGTTCTCGATACAAATCACGTTGTTTCCAAACCAAG 493
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 487 CGGTTTCTGATGACTCAGCGACCGCTTTCTCCATACAAATCACGTTGTTTCCTAACCAAG 546
Query 494 GATTCTCCATCGGTGTTGCAGCACACCACGCTGTTTTGGATGGGAAGACGTCAAGCACGT 553
|||||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||| |
Sbjct 547 GATTCTCCATAGGTGTTGCAGCACACCATGCTGTTTTAGACGGGAAAACGTCAAGCACTT 606
Query 554 TTATCAAAGCTTGGGCTCAAATCTGCAAACAACAACTTGACAA-CATGCCGGAGAATCTA 612
|||||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||
Sbjct 607 TTATCAAAGCTTGGGCTCAAATCTGCAAACAAGAACTTCA-AAGCATGCCGGAGAATCTA 665
Query 613 ACTCCGTCTTATGACCGGTCTTTGATCAAAGATCCAACCGGA-CTCGATGAAAAGATGAT 671
|||||||||||||||||||||||||||||| |||| ||| | || ||||||||||||||
Sbjct 666 ACTCCGTCTTATGACCGGTCTTTGATCAAATATCCGACC-TATCTTGATGAAAAGATGAT 724
Query 672 AGAGTTAGTGAGATCTCTCAAAGAGGACAAAACCAACATCAGAAGCTTGACTTCTCTTCC 731
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 725 AGAGTTAGTGAGATCTCTCAAAGAGGACCAAACCAACATCAGAAGCTTGACTTCGCTTCC 784
Query 732 CGCTAGTGAACTCGGAGACGATATCGTGTTAGCCACGCTAGTTCTCTCTCGCGATGATAT 791
| ||||| |||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 785 CTCTAGTAAACTCGGAGACGATGTCGTGTTAGCCACGCTAGTTCTCTCTCGGGCTGATAT 844
Query 792 CGAGAGACTAAGGGAGCAAGTCAAGAACGTGTCACCGAGCCTTCACTTGTCGACTTTTGT 851
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 845 TGAGAGACTTAGGGAACAAGTCAAGAACGTGTCACCGAGCCTCCACTTGTCGACTTTTGT 904
Query 852 CATCGCTTATGCTTACGCGTGGAGTTGCTTCGTGAAGGCGCGTGGAGGAAACGGAGAGAG 911
||| ||||| ||||||||||||| ||| ||||||||||| |||||||| || ||| ||
Sbjct 905 CATTGCTTACGCTTACGCGTGGACTTGTTTCGTGAAGGCACGTGGAGGTAATAAAGACAG 964
Query 912 GTCAGTGAGTTTCTTGTTCGTAGGAGATTTCAGAGACCGGTTAGATCCGAAGCTTCCGGG 971
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 965 ATCAGTGAGTCTCTTGTTCGTAGGAGATTTCAGAGACCGGTTAGATCCGAAGCTCCCGGG 1024
Query 972 GAATTACTTCGGAAACTGTATGATTCCGGTGGGTTGTTACAACCGTAAGGCGGCAGAGTT 1031
|| |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1025 GACTTACTTCGGAAACTGTATGATTCCGGTGGGCTGTTATAACCGTAAGGCGGCGGAGTT 1084
Query 1032 TATGGAAGAGAAGGGATTTGTGACGGCGGTTGAGATTCTTAGTGATTTGGTAAAAGGATT 1091
||||||||||||||||||||||||||||| ||||||| |||| |||||||| ||||| ||
Sbjct 1085 TATGGAAGAGAAGGGATTTGTGACGGCGGCTGAGATTATTAGCGATTTGGTGAAAGGGTT 1144
Query 1092 GAGTTCAAGAAAGATAGAGACCATTGCGGACACTTTTGTGGAGGGATTTGGTTTTCAGAG 1151
|||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 1145 GAGTTCAAGAAAGATAGAGACCATTGCGGACACTTTCGTGGAAGGATTTAGTTTTCAGAG 1204
Query 1152 TTGGAGCACACAGTTTGGGACGGTAGCCGGGTCGACCCGGTTGGGAGTATACGAGGCGGA 1211
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1205 TTGGAGTACACAGTTTGGGACGATAGCCGGGTCGACCCGGTTGGGAGTATACGAGGCGGA 1264
Query 1212 TTTCGGGTGGGGAAGACCCGTTAAGGTTGATATTGTCTCCATTGACCAAGGAGAGGCGAT 1271
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1265 TTTCGGGTGGGGAAGACCCGTTAAAGTTGATATTGTCTCCATTGACCAAGGAGAAGCGAT 1324
Query 1272 CTCAATGGCAGAGAGACGTGAGGAATCAGGTGGCGTGGAGATTGGAATGTGTTTGAAAAA 1331
| ||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1325 CGCAATGGCTGAGAGACGTGATGAGTCAGGTGGCGTTGAGATTGGAATGTGTTTGAAAAA 1384
Query 1332 GACTGAAATGGATAT-GGTCATGTCtttttttAACAATGGTTTACA 1376
||||||||||||| | |||| |||||||||| ||||||||||||||
Sbjct 1385 GACTGAAATGGAT-TCGGTCGTGTCTTTTTTCAACAATGGTTTACA 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5