BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936794

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08110.1 | Symbols:  | transposable element gene | chr4:5083...   183    1e-45
  AT1G48700.1 | Symbols:  | 2-oxoglutarate (2OG) and Fe(II)-depen...   183    1e-45


> AT4G08110.1 | Symbols:  | transposable element gene | chr4:5083926-5086640 
REVERSE LENGTH=2715
Length=2715

 Score =  183 bits (99),  Expect = 1e-45
 Identities = 127/140 (91%), Gaps = 4/140 (3%)
 Strand=Plus/Plus

Query  288   CAGAGCAACAAGC-ATCTCAAATTCGGATTGCAAACTTGGAGAGGCTTGTTAT-GTATTG  345
             ||||||||||| | |||||||| |||||| ||||||||||||| ||||| ||| ||||||
Sbjct  2241  CAGAGCAACAA-CAATCTCAAACTCGGATCGCAAACTTGGAGATGCTTG-TATCGTATTG  2298

Query  346   GAAAGAGAGTGATCCTGCCTTTGCAGCTTTTGTTGCATCTCAGCCACAACCAACTGCACC  405
             |||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct  2299  GAAACAGAGTGATCCTGCGTTTGCAGCTTTTGTTGCATCTCAGCCACATCCAACTGCACC  2358

Query  406   AGCCAACACACAAGCCGCCA  425
             ||||| ||||| |||| |||
Sbjct  2359  AGCCACCACACCAGCCACCA  2378


> AT1G48700.1 | Symbols:  | 2-oxoglutarate (2OG) and Fe(II)-dependent 
oxygenase superfamily protein | chr1:18011035-18012871 
REVERSE LENGTH=1174
Length=1174

 Score =  183 bits (99),  Expect = 1e-45
 Identities = 127/141 (90%), Gaps = 0/141 (0%)
 Strand=Plus/Plus

Query  152  AGGGATTCTGACGCAGACTTTCATGTGGAAGATTCAAAAATAACATTGAATGTTTGTTTG  211
            |||||| |||||| || ||||||||||||||||||| | |||||||||||||||||||||
Sbjct  505  AGGGATGCTGACGTAGGCTTTCATGTGGAAGATTCAGACATAACATTGAATGTTTGTTTG  564

Query  212  AGTAAACAAGGAGAGGGAGGGGAAATATTTTTTGCAGGCACACAATGCAAGAAACATATG  271
            ||||||||||| |||||||| |||||| |||| |||||| ||| |||||| |||||||||
Sbjct  565  AGTAAACAAGGTGAGGGAGGAGAAATACTTTTCGCAGGCGCACGATGCAATAAACATATG  624

Query  272  GATACAGATTCAAAGCCAGAG  292
            |||| |||| |||||||||||
Sbjct  625  GATATAGATCCAAAGCCAGAG  645



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5