BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936801

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00800.1 | Symbols:  | structural constituent of ribosome | ...   597    5e-170


> ATCG00800.1 | Symbols:  | structural constituent of ribosome 
| chrC:82826-83482 REVERSE LENGTH=657
Length=657

 Score =  597 bits (323),  Expect = 5e-170
 Identities = 377/400 (94%), Gaps = 16/400 (4%)
 Strand=Plus/Plus

Query  1    AGATAAACCCCGAAGAGTCGAAGAATTACAGATGAATGTTCAAAAAGAACTAAATTGTGT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  258  AGATAAACCCCGAAGAGTCGAAGAATTACAGATGAATGTTCAAAAAGAACTAAATTGTGT  317

Query  61   CAATAGAAAACTCAACATTGCTATTACCAGAATTTCCAATCCGTATGGGGATCCTAATAT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  318  CAATAGAAAACTCAACATTGCTATTACCAGAATTTCCAATCCGTATGGGGATCCTAATAT  377

Query  121  TCTTGCAGAATTTATAGCTGGACAATTAAAAGATCGTGTTTCTTTTCGAAAAGCAATGAA  180
            ||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct  378  TCTTGCAGAATTTATCGCTGGACAATTAAAAAATCGCGTTTCTTTTCGAAAAGCAATGAA  437

Query  181  AAAAGCTATTGAATTAACTGAACAAGCGAATACAAAAGGAATTCAAGTACAAATTGCAGG  240
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  438  AAAAGCTATTGAATTAACTGAACAGGCGAATACAAAAGGAATTCAAGTACAAATTGCAGG  497

Query  241  ACGTATCGACGGAAAAGAAATTGCACGC-T--A--GG--CAGAG---------TTCCTTT  284
            |||||||||||||||||||||||||||  |  |  ||  |||||         |||||||
Sbjct  498  ACGTATCGACGGAAAAGAAATTGCACGTGTTGAATGGATCAGAGAAGGCAGAGTTCCTTT  557

Query  285  ACAAACAAGTGAAGCTAAAATTGATTATTGTTCCTATACAGTTCGAACTATTTATGGGGT  344
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  558  ACAAACAATTGAAGCTAAAATTGATTATTGTTCCTATACAGTTCGAACTATTTATGGGGT  617

Query  345  CTTAGGAATAAAAATTTGGATATTCGTAGACGAAGAATaa  384
             |||||||||||||||||||||||||||||||||||||||
Sbjct  618  TTTAGGAATAAAAATTTGGATATTCGTAGACGAAGAATAA  657



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35364839488


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5