BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936810
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT3G30340.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1890 0.0
> AT3G30340.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr3:11956601-11959098 FORWARD LENGTH=1249
Length=1249
Score = 1890 bits (1023), Expect = 0.0
Identities = 1098/1135 (97%), Gaps = 1/1135 (0%)
Strand=Plus/Plus
Query 1 TGATATACTTATAATTATAAATCATGGTACAGTTTGATACAAAACTATGGAAGGCTGTGC 60
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3 TGATATACTTATAATCATAAATCATGGTAAAGTTTGATACAAAACTATGGAAGGCTGTGC 62
Query 61 TTATGATGTCCATGATCAACATTGGTTTAAGCGTTGTAAACGTTATGTTCAAGAAGATGA 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 63 TTATGATGTCCATGATCAACATTGGTTTAAGTGTTGTAAACGTTATGTTCAAGAAGATGA 122
Query 121 TTGATGAAGGACTTAACCGTATGGTCGCGACCACTTACCGACTTGCTGCAGGAACTCTGT 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 123 TTGATGAAGGACTTAACCGTATGGTCGCGACCACTTACCGACTTGCTGTAGGAACTCTGT 182
Query 181 TCTTGATACCATTCGCGATTTTCTTGGAACGACATAACAGGCCAAAACTCACGGGTAGGA 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 183 TCTTGATACCATTCGCGATTTTCTTGGAAAGACATAACAGGCCAAAACTCACGGGTAGGA 242
Query 241 TCTTGTGTTCACTCTTCTTTAGCGCTCTTCTGGGGACAAGTTTGGTGCAATACTTCTTTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TCTTGTGTTCACTCTTCTTTAGCGCTCTTCTGGGGACAAGTTTGGTGCAATACTTCTTTC 302
Query 301 TTATTGGGCTAGAGTATACATCTTCTACTTTTTCCTTAGCGTTTAGCAACATGGTTCCTT 360
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 303 TTATTGGACTAGAGTATACATCTTCAACTTTTTCCTTAGCGTTTAGCAACATGGTTCCTT 362
Query 361 CGGTCACTTTTGCCTTGGCTCTCGTTTTTAGACAAGAGACGCTGAACATCAAGAGCAACG 420
|||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 363 CGGTTACATTTGCCTTGGCTCTCGTCTTTAGGCAAGAGACGCTGAACATCAAGAGCAACG 422
Query 421 TAGGAAGAGCCAAAGTGTTAGGCACAATGATATGTATTTGTGGAGCTTTAGTGCTTACAC 480
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 423 TAGGAAGAGCCAAACTGCTAGGCACAATGATATGTATTTGTGGAGCTTTAGTGCTTACGC 482
Query 481 TTTATAAAGGAACCGCTTTAAGTCGAGAACACAATACTCATATGCAAACACATACAAGAA 540
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 483 TTTATAAAGGAACCGCTTTAAGTCGAGAACACAGTACTCATATGGAAACACATACAAGAA 542
Query 541 CTGATTCAACCGGTGCAATGACGCAAAAGTGGGCAATGGGTTCGATCATGCTGGTTATAT 600
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 543 CTGATTCCACCGGTGCAATGACACAAAAGTGGGCAATGGGTTCGATCATGCTGGTTATAT 602
Query 601 CGATCATAATATGGTCATCTTGGTTCATTGTTCAAGCTAAAATAAGCCGAGTTTATCGGT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 603 CGATCATAATATGGTCATCTTGGTTCATTGTTCAAGCTAAAATAAGCCGAGTTTATCCGT 662
Query 661 GCCAATACACGAGTACCACGATCCTCTCTTTCTTTGGTGTGATCCAATCTGCTTTGTTGA 720
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 663 GCCAATACACGAGTACCACGATCCTCTCTTTCTTTGGCGTGATTCAATCTGCTTTGTTGA 722
Query 721 GTTTGATCTCGGAGAGGAGCATGTCTATGTGGGTCGTTAAAGACAAGTTCCAAGTTTTAG 780
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 723 GTTTGATCTCGGAGAGGAGCACATCTATGTGGGTCGTTAAAGACAAGTTCCAAGTTTTAG 782
Query 781 CTTTACTTTATTCGGGTATCGTTGGATCGGGATTGTGCTACGTGGGAATGTCGTGGTGTC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CTTTACTTTATTCGGGTATCGTTGGATCGGGATTGTGCTACGTGGGAATGTCGTGGTGTC 842
Query 841 TCCGGCAAAGAGGTGCGGTTTTCACGTCCAGCTTCATACCTTTGATTCAAGTCTTTGCTG 900
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 843 TCCGCCAAAGAGGTGCGGTGTTCACGTCGAGCTTCATACCTTTGATTCAAGTCTTTGCTG 902
Query 901 CCATTTTCAGCTTCTCTTTCCTTCATGAGCAAATTTACTGTGGAAGTGTGATAGGATCAA 960
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 903 CCATTTTCAGCTTCTCTTTCCTTCATGAGCAAATATACTGTGGAAGTGTGATAGGATCAA 962
Query 961 TGGTCATCATCGTGGGACTTTACATACTTTTATGGGGAAAAAGCAAGGATAAGTCTGCAT 1020
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 963 TGGTCATTATCGTGGGACTTTATATACTTTTATGGGGAAAAAGCAAGGATAAGTCTGCAT 1022
Query 1021 CAGTAACCAAACAAGAACCATTAAATCTTGATCTTGAAGGTTGTGGGACAGCTCCAAAGG 1080
|||| |||||||||||||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct 1023 CAGTGACCAAACAAGAACCATTAGATCTTGATATTGAAGGTTGTGGGACAGCACCAAAGG 1082
Query 1081 AACTCAATAGTACTGCCCATCCAGTCTCTGAAAAATAATAACTTCCAAGATATAT 1135
||||||||||||||||||||| ||| |||| |||||||||||||| |||||||||
Sbjct 1083 AACTCAATAGTACTGCCCATCAAGTGTCTGCAAAATAATAACTTC-AAGATATAT 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5