BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936812

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G43833.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   156    2e-37


> AT3G43833.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:15687554-15688773 
FORWARD LENGTH=974
Length=974

 Score =  156 bits (84),  Expect = 2e-37
 Identities = 96/102 (94%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  411  AGATTTATTGTAGGGAAGAAGATCTTCTTCGGTGAAGCTAGGCTCACTTTCTCATCTCTT  470
            |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| 
Sbjct  555  AGATTTATTGTAGGGAAGAAGATCTTCTGCGGTGAAGCTAGGCTCACTTTCGCATCTCTA  614

Query  471  TGTGATATGGGTCGGTGGTTCTAGATCGTCATTGAAGTTCCC  512
            |||||||||| | ||||||||| |||||||||||||||||||
Sbjct  615  TGTGATATGGATTGGTGGTTCTCGATCGTCATTGAAGTTCCC  656



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24564497883


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5