BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936820

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29780.1 | Symbols: RALFL27 | ralf-like 27 | chr3:11671741-1...   435    2e-121


> AT3G29780.1 | Symbols: RALFL27 | ralf-like 27 | chr3:11671741-11672189 
FORWARD LENGTH=449
Length=449

 Score =  435 bits (235),  Expect = 2e-121
 Identities = 322/363 (89%), Gaps = 9/363 (2%)
 Strand=Plus/Plus

Query  24   ATGGCCAAATCATTTttct-ctgtctccttcttcttcacc-gtctctcttctctttctcc  81
            ||| ||||| ||||||||| || ||||||||||||||||| | |||||||||| ||||||
Sbjct  1    ATGACCAAAACATTTTTCTCCT-TCTCCTTCTTCTTCACCAG-CTCTCTTCTCCTTCTCC  58

Query  82   tcACGGCGGCTTCAGCAACCGCATTTGCAGAGAACGTTACTAGTGAGTTGAGATATGATG  141
            || ||||  |||| |||||||||| | ||| ||| |||||||||| |||||||||||| |
Sbjct  59   TCGCGGCAACTTCCGCAACCGCATCTACAGGGAATGTTACTAGTGGGTTGAGATATGACG  118

Query  142  GATGTTCTCCTGGAGACACCGTTGGAGAATGCATAACCGCGGCGGTT---GAGGATGATG  198
            ||||| ||||||||||||||||||||||||| ||||||||  |||||   ||||| ||||
Sbjct  119  GATGTGCTCCTGGAGACACCGTTGGAGAATGTATAACCGCAACGGTTGAGGAGGAGGATG  178

Query  199  ATGAAGGAGTTGAGGCGTTGGTGCGGCGGATTCTTCAACAAA-AAAGGTATTTAAGCTAC  257
            | ||||||||||||||| | || ||||||||||| ||||||| ||| ||| |||||||||
Sbjct  179  AGGAAGGAGTTGAGGCGGTAGTCCGGCGGATTCTACAACAAAGAAA-GTACTTAAGCTAC  237

Query  258  AAAACTTTGCAGAAGCAGCCGACTTGTGATGGAAGAATTGCCGGTAATTGCATAGGAACT  317
            |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||
Sbjct  238  AAAACTTTGCAGAAGCAGCCAACTTGTGATGGTAGAATTGCTGGTAATTGCATAGGGACT  297

Query  318  GTTAATCCAAAAGGTTCAACTTGTACTTACTACCAAAGATGCAAACGTGCCGCCTAGTTG  377
            ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct  298  GTTAATCCAAAAGGTGCAACTTGTACTTACTACCAGAGATGCAAACGTGCCGCATAGTTA  357

Query  378  TTT  380
            |||
Sbjct  358  TTT  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5