BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936826
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
ATMG00080.1 | Symbols: RPL16 | ribosomal protein L16 | chrM:250... 614 7e-175
ATMG00730.1 | Symbols: COX3 | cytochrome c oxidase subunit 3 | ... 540 1e-152
AT2G07811.1 | Symbols: | pseudogene of mitochondrial protein |... 370 2e-101
ATMG00090.1 | Symbols: | structural constituent of ribosome;pr... 291 1e-77
AT2G07671.1 | Symbols: | ATP synthase subunit C family protein... 97.1 3e-19
ATMG00690.1 | Symbols: ORF240A | hypothetical protein | chrM:20... 69.4 6e-11
> ATMG00080.1 | Symbols: RPL16 | ribosomal protein L16 | chrM:25076-25615
REVERSE LENGTH=540
Length=540
Score = 614 bits (332), Expect = 7e-175
Identities = 344/350 (98%), Gaps = 0/350 (0%)
Strand=Plus/Plus
Query 136 ATGTATTTAACCAGAAAATCGATTATGCTCCTGCGGAAGTATCTACTCGTTACGGAATCT 195
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTATTTAACCATAAAATCGATTATGCTCCTGCGGAAGTATCTACTCGTTACGGAATCT 60
Query 196 CAGGTGTCAAAGTATGGATTTCATATAGTCaaaaaaaaGGGGGACGTGCTATATCCGAAA 255
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CAGGTGTCAAAGTGTGGATTTCATATAGTCAAAAAAAAGGGAGACGTGCTATATCCGAAA 120
Query 256 CGTACGAAATATAGTAAATATCGTAAAGGCAGATGTAGTAGGGGTTGCAAACCGGATGGT 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTACGAAATATAGTAAATATCGTAAAGGCAGATGTAGTAGGGGTTGCAAACCGGATGGT 180
Query 316 ACAAAACTGGGTTTTGGAAGATATGGCACTAAAAGTTGTAAAGCTGGTCGTCTTTCATAT 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACAAAACTGGGTTTTGGAAGATATGGCACTAAAAGTTGTAAAGCTGGTCGTCTTTCATAT 240
Query 376 CGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACACTTACATCGTGCTATGAGCGGA 435
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 CGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACACTTTCATCGTGCTATGAGCGGA 300
Query 436 CAATTCCGAAGAAATGGTAAGATATGGGTAAGAGTTTTCGCGAATCCCCC 485
|||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 301 CAATTCCGAAGAAATGGTAAGATATGGGTAAGAGTTTTCGCGGATCTCCC 350
> ATMG00730.1 | Symbols: COX3 | cytochrome c oxidase subunit 3
| chrM:217631-219077 FORWARD LENGTH=1447
Length=1447
Score = 540 bits (292), Expect = 1e-152
Identities = 326/342 (95%), Gaps = 4/342 (1%)
Strand=Plus/Plus
Query 710 CTTTACGAGCACGGAATCTCCAATTGGCGGAGTCTTGGGAACGGGTCGAGGGGACGGAAC 769
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 58 CTTTACGAGCACGGAATCGCCTATTGTCGGAGTCTTGGGAACGGGTCGAGGGGACGGAAC 117
Query 770 GGGCCCTCCAGAACGAGGGGGATCCAGGCCGACGTCGGGAATTAACGGCGCGCCTGGATC 829
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 118 GGGCCCTCCAGAACGAGGGGGATCCAGGCCGGCGTCGGGAATTAACCGCGCGCCTGGATC 177
Query 830 AGGAAATTA-GATCACTCCAACGCCAAATCCATCTCGGTCGAAGAGCTGATTCCATTCGG 888
|||||| || || | |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 178 AGGAAA-TACGAACCCTCCAACGACAAATCCATCTCGGTCGAAGAGCTGATTCCATTCGG 236
Query 889 GATCGGCAAATCGCCGAGTGGAGGGGAAGGTTTAATACGGAGTTAGCAAGGG-TAGAGGA 947
||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct 237 GATCGGCAAATCGCCGAGTGGAGGGGAAGGTTTAATACGGAATTAGC-AGGGATAGAGGA 295
Query 948 GGAAAGCGCACGCCGTGCGTTCCTTAATTGGTGTCTCCGTGTGCTCATCCATGCACACGA 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GGAAAGCGCACGCCGTGCGTTCCTTAATTGGTGTCTCCGTGTGCTCATCCATGCACACGA 355
Query 1008 GCACCAAcccccccAGAACTAAATCCGTTCTTTCGTTCTCTT 1049
| ||||||| |||||||||||||||||||| |||||||||||
Sbjct 356 GGACCAACCTCCCCAGAACTAAATCCGTTCGTTCGTTCTCTT 397
> AT2G07811.1 | Symbols: | pseudogene of mitochondrial protein
| chr2:3313598-3314901 REVERSE LENGTH=1304
Length=1304
Score = 370 bits (200), Expect = 2e-101
Identities = 211/216 (98%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 1 GAAGAAGCGGGCTAGTCCCCGAAAATGCCCGTTAATAAAGCAAGTTGGGGAA-AAAATCG 59
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1089 GAAGAAGCGGGCTAGTCCCCGAAAATGCCCGTTAATCAAGCAAGTTGGGGAACAAAATCG 1148
Query 60 TAGTTCAGATTCAAGTCGGTTCAGTGAGGGCGACCGCGAAAGTATAAATGCTATAAGCAT 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1149 TAGTTCAGATTCAAGTCGGTTCAGTGAGGGCGACCACGAAAGTATAAATGCTATAAGCAT 1208
Query 120 AGAAAAACTTCTCGTAATGTATTTAACCAGAAAATCGATTATGCTCCTGCGGAAGTATCT 179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1209 AGAAAAACTTCTCGTAATGTATTTAACCATAAAATCGATTATGCTCCTGCGGAAGTATCT 1268
Query 180 ACTCGTTACGGAATCTCAGGTGTCAAAGTATGGATT 215
||||||||||||||||||||||||||||| ||||||
Sbjct 1269 ACTCGTTACGGAATCTCAGGTGTCAAAGTGTGGATT 1304
> ATMG00090.1 | Symbols: | structural constituent of ribosome;protein
binding | chrM:25482-28733 REVERSE LENGTH=1671
Length=1671
Score = 291 bits (157), Expect = 1e-77
Identities = 163/166 (98%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 104 TAAATGCTATAAGCATAGAAAAACTTCTCGTAATGTATTTAACCAGAAAATCGATTATGC 163
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1506 TAAATGCTATAAGCATAGAAAAACTTCTCGTAATGTATTTAACCATAAAATCGATTATGC 1565
Query 164 TCCTGCGGAAGTATCTACTCGTTACGGAATCTCAGGTGTCAAAGTATGGATTTCATATAG 223
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1566 TCCTGCGGAAGTATCTACTCGTTACGGAATCTCAGGTGTCAAAGTGTGGATTTCATATAG 1625
Query 224 TCaaaaaaaaGGGGGACGTGCTATATCCGAAACGTACGAAATATAG 269
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1626 TCAAAAAAAAGGGAGACGTGCTATATCCGAAACGTACGAAATATAG 1671
Score = 73.1 bits (39), Expect = 5e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 49 GGAAAAAATCGTAGTTCAGATTCAAGTCGGTTCAGTGAG 87
|||||||||||||||||||||||||||||||||||||||
Sbjct 37 GGAAAAAATCGTAGTTCAGATTCAAGTCGGTTCAGTGAG 75
> AT2G07671.1 | Symbols: | ATP synthase subunit C family protein
| chr2:3251665-3252113 REVERSE LENGTH=449
Length=449
Score = 97.1 bits (52), Expect = 3e-19
Identities = 57/59 (97%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 1 GAAGAAGCGGGCTAGTCCCCGAAAATGCCCGTTAATAAAGCAAGTTGGGGAA-AAAATC 58
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 386 GAAGAAGCGGGCTAGTCCCCGAAAATGCCCGTTAATCAAGCAAGTTGGGGAACAAAATC 444
> ATMG00690.1 | Symbols: ORF240A | hypothetical protein | chrM:203588-204310
REVERSE LENGTH=723
Length=723
Score = 69.4 bits (37), Expect = 6e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 49 GGAAAAAATCGTAGTTCAGATTCAAGTCGGTTCAGTG 85
|||||||||||||||||||||||||||||||||||||
Sbjct 172 GGAAAAAATCGTAGTTCAGATTCAAGTCGGTTCAGTG 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51439766528
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5