BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936828
Length=611
Score E
Sequences producing significant alignments: (Bits) Value
ATMG00350.1 | Symbols: TRNP | Mitochondrial-encoded proline-acc... 119 4e-26
AT2G07762.1 | Symbols: | pre-tRNA | chr2:3495012-3495086 FORWA... 119 4e-26
ATMG00340.1 | Symbols: TRNY.1 | tRNA-Tyr | chrM:104221-104295 F... 111 6e-24
ATMG00790.1 | Symbols: TRNY.3 | tRNA-Tyr | chrM:227502-227577 F... 111 6e-24
AT2G07761.1 | Symbols: | pre-tRNA | chr2:3494776-3494850 FORWA... 111 6e-24
AT2G07745.1 | Symbols: | pre-tRNA | chr2:3268807-3268886 FORWA... 111 6e-24
AT2G07753.1 | Symbols: | pre-tRNA | chr2:3303354-3303428 REVER... 111 6e-24
AT2G07683.1 | Symbols: | transposable element gene | chr2:3301... 99.0 5e-20
> ATMG00350.1 | Symbols: TRNP | Mitochondrial-encoded proline-accepting
tRNA. | chrM:104457-104531 FORWARD LENGTH=75
Length=75
Score = 119 bits (64), Expect = 4e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 135 GGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACAC 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACAC 5
Query 195 CTCG 198
||||
Sbjct 4 CTCG 1
> AT2G07762.1 | Symbols: | pre-tRNA | chr2:3495012-3495086 FORWARD
LENGTH=75
Length=75
Score = 119 bits (64), Expect = 4e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 135 GGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACAC 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACAC 5
Query 195 CTCG 198
||||
Sbjct 4 CTCG 1
> ATMG00340.1 | Symbols: TRNY.1 | tRNA-Tyr | chrM:104221-104295
FORWARD LENGTH=75
Length=75
Score = 111 bits (60), Expect = 6e-24
Identities = 62/63 (98%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 359 GAAGTGGTTGTGGATTCGAACCACTGACACAAGGATTTACAGTCCTTTGCTCTAACCATC 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 75 GAAGTGGTTGTGGATTCGAACCACTGACACAAGGATTTACAGTCCTTTGCTCTAACCAGC 16
Query 419 TGA 421
|||
Sbjct 15 TGA 13
> ATMG00790.1 | Symbols: TRNY.3 | tRNA-Tyr | chrM:227502-227577
FORWARD LENGTH=76
Length=76
Score = 111 bits (60), Expect = 6e-24
Identities = 62/63 (98%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 359 GAAGTGGTTGTGGATTCGAACCACTGACACAAGGATTTACAGTCCTTTGCTCTAACCATC 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 76 GAAGTGGTTGTGGATTCGAACCACTGACACAAGGATTTACAGTCCTTTGCTCTAACCAGC 17
Query 419 TGA 421
|||
Sbjct 16 TGA 14
> AT2G07761.1 | Symbols: | pre-tRNA | chr2:3494776-3494850 FORWARD
LENGTH=75
Length=75
Score = 111 bits (60), Expect = 6e-24
Identities = 62/63 (98%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 359 GAAGTGGTTGTGGATTCGAACCACTGACACAAGGATTTACAGTCCTTTGCTCTAACCATC 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 75 GAAGTGGTTGTGGATTCGAACCACTGACACAAGGATTTACAGTCCTTTGCTCTAACCAGC 16
Query 419 TGA 421
|||
Sbjct 15 TGA 13
> AT2G07745.1 | Symbols: | pre-tRNA | chr2:3268807-3268886 FORWARD
LENGTH=80
Length=80
Score = 111 bits (60), Expect = 6e-24
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 356 ATAGAAGTGGTTGTGGATTCGAACCACTGACACAAGGATTTACAGTCCTTTGCTCTAACC 415
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 77 ATAGAAGTGGTTGTGGAATCGAACCACTAACACAAGGATTTACAGTCCTTTGCTCTAACC 18
Query 416 ATCTGA 421
||||||
Sbjct 17 ATCTGA 12
> AT2G07753.1 | Symbols: | pre-tRNA | chr2:3303354-3303428 REVERSE
LENGTH=75
Length=75
Score = 111 bits (60), Expect = 6e-24
Identities = 62/63 (98%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 359 GAAGTGGTTGTGGATTCGAACCACTGACACAAGGATTTACAGTCCTTTGCTCTAACCATC 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 75 GAAGTGGTTGTGGATTCGAACCACTGACACAAGGATTTACAGTCCTTTGCTCTAACCAGC 16
Query 419 TGA 421
|||
Sbjct 15 TGA 13
> AT2G07683.1 | Symbols: | transposable element gene | chr2:3301883-3303367
FORWARD LENGTH=1485
Length=1485
Score = 99.0 bits (53), Expect = 5e-20
Identities = 58/60 (97%), Gaps = 1/60 (2%)
Strand=Plus/Plus
Query 314 AAA-GGACCAAAGGGCCATTCTTCATATACCTCAGCTCCGAGAATAGAAGTGGTTGTGGA 372
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 AAAGGGACCAAAAGGCCATTCTTCATATACCTCAGCTCCGAGAATAGAAGTGGTTGTGGA 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29437210142
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5