BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936830
Length=518
Score E
Sequences producing significant alignments: (Bits) Value
ATMG01030.1 | Symbols: ORF106E | hypothetical protein | chrM:26... 593 4e-169
AT2G07673.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 588 2e-167
> ATMG01030.1 | Symbols: ORF106E | hypothetical protein | chrM:264113-264433
REVERSE LENGTH=321
Length=321
Score = 593 bits (321), Expect = 4e-169
Identities = 321/321 (100%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 177 ATGCAACAGGTATTCCGTAGAGAAGGTATAAATCTATACTATTATTCAAACAAAACAAAG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAACAGGTATTCCGTAGAGAAGGTATAAATCTATACTATTATTCAAACAAAACAAAG 60
Query 237 AAGTTCTCTCTTGACTCTTGGTACCTGCCTCAGCTGCACCTACTCGAAAGCAAAGGAAAC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTTCTCTCTTGACTCTTGGTACCTGCCTCAGCTGCACCTACTCGAAAGCAAAGGAAAC 120
Query 297 AAGAAAAGCAAGGCAGCTACGGACCAATACTTCATACATCCTTCCCGGACGAGACAAGAA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGAAAAGCAAGGCAGCTACGGACCAATACTTCATACATCCTTCCCGGACGAGACAAGAA 180
Query 357 AGGGATCTTACAGACAGGAAGCACCGCCCGGAACAGCAACAACTACAACGACGGGTAACT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGGATCTTACAGACAGGAAGCACCGCCCGGAACAGCAACAACTACAACGACGGGTAACT 240
Query 417 CGCTGGAAAAAAGAAGTCACAACTAGATCAAGACCTAAGGAGACTTCGAGCACACATCTT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCTGGAAAAAAGAAGTCACAACTAGATCAAGACCTAAGGAGACTTCGAGCACACATCTT 300
Query 477 CCCTATCACGGCTCATACTAA 497
|||||||||||||||||||||
Sbjct 301 CCCTATCACGGCTCATACTAA 321
> AT2G07673.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:ATMG01030.1);
Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr2:3266578-3266898
FORWARD LENGTH=321
Length=321
Score = 588 bits (318), Expect = 2e-167
Identities = 320/321 (99%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 177 ATGCAACAGGTATTCCGTAGAGAAGGTATAAATCTATACTATTATTCAAACAAAACAAAG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAACAGGTATTCCGTAGAGAAGGTATAAATCTATACTATTATTCAAACAAAACAAAG 60
Query 237 AAGTTCTCTCTTGACTCTTGGTACCTGCCTCAGCTGCACCTACTCGAAAGCAAAGGAAAC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTTCTCTCTTGACTCTTGGTACCTGCCTCAGCTGCACCTACTCGAAAGCAAAGGAAAC 120
Query 297 AAGAAAAGCAAGGCAGCTACGGACCAATACTTCATACATCCTTCCCGGACGAGACAAGAA 356
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGAAAAGCAAGGCAGCTATGGACCAATACTTCATACATCCTTCCCGGACGAGACAAGAA 180
Query 357 AGGGATCTTACAGACAGGAAGCACCGCCCGGAACAGCAACAACTACAACGACGGGTAACT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGGATCTTACAGACAGGAAGCACCGCCCGGAACAGCAACAACTACAACGACGGGTAACT 240
Query 417 CGCTGGAAAAAAGAAGTCACAACTAGATCAAGACCTAAGGAGACTTCGAGCACACATCTT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCTGGAAAAAAGAAGTCACAACTAGATCAAGACCTAAGGAGACTTCGAGCACACATCTT 300
Query 477 CCCTATCACGGCTCATACTAA 497
|||||||||||||||||||||
Sbjct 301 CCCTATCACGGCTCATACTAA 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24765434471
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5