BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936831

Length=918
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07827.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  60.2    3e-08


> AT2G07827.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 1 Blast hits 
to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:3474996-3476845 FORWARD LENGTH=540
Length=540

 Score = 60.2 bits (32),  Expect = 3e-08
 Identities = 35/36 (97%), Gaps = 1/36 (3%)
 Strand=Plus/Plus

Query  215  GAGAGGTGCTTTAGCAACTCGACTGAAAAGGAGAGG  250
            |||||||||||||||||||||||||||| |||||||
Sbjct  453  GAGAGGTGCTTTAGCAACTCGACTGAAA-GGAGAGG  487



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44859093271


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5