BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936832

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07749.1 | Symbols:  | Mitovirus RNA-dependent RNA polymeras...  56.5    1e-07


> AT2G07749.1 | Symbols:  | Mitovirus RNA-dependent RNA polymerase 
| chr2:3247234-3249357 FORWARD LENGTH=2124
Length=2124

 Score = 56.5 bits (30),  Expect = 1e-07
 Identities = 32/33 (97%), Gaps = 0/33 (0%)
 Strand=Plus/Minus

Query  118   AGCGGGGAACCACCAAGTGCAGCTAAAGTAGGG  150
             |||||||||||||||||||||||||||| ||||
Sbjct  1369  AGCGGGGAACCACCAAGTGCAGCTAAAGCAGGG  1337



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5