BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936835

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07709.1 | Symbols:  | pseudogene, similar to NADH dehydroge...  62.1    3e-09


> AT2G07709.1 | Symbols:  | pseudogene, similar to NADH dehydrogenase, 
blastp match of 93% identity and 1.1e-175 P-value to 
GP|485862|emb|CAA52952.1||X75036 NADH dehydrogenase {Triticum 
aestivum} | chr2:3388454-3394516 FORWARD LENGTH=6063
Length=6063

 Score = 62.1 bits (33),  Expect = 3e-09
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Minus

Query  117  GGAATTTCTCTCCTCTCCTTTCAGTCGAGTTCC  149
            |||||||||||||||||||||||||||||||||
Sbjct  628  GGAATTTCTCTCCTCTCCTTTCAGTCGAGTTCC  596



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14225772967


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5