BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936837

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07779.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   388    8e-108


> AT2G07779.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:3254777-3255370 
REVERSE LENGTH=594
Length=594

 Score =  388 bits (210),  Expect = 8e-108
 Identities = 215/217 (99%), Gaps = 1/217 (0%)
 Strand=Plus/Plus

Query  1    TGTTTTTGAGTGTGGGGAATATGGCCACCGAGATAGAGCTTTGTCCGAAGCAAAACCAGA  60
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  77   TGTTTTTGAGTGTGGGGAATATGGCCACCG-GATAGAGCTTTGTCCGAAGCAAAACCAGA  135

Query  61   CTGATGTAGAAAACTCACCGGCGGCGAAGGAGGTTCTCCCAAACCCGGATCCGCAAGTCG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  136  CTGATGTAGAAAACTCACCGGCGGCGAAGGAGGTTCTCCCAAACCCGGATCCGCAAGTCG  195

Query  121  GGTCGGAACAAAGGCCTTTCGGACCTTGGATGCTACCTCCCAACAGACGTCGCAAGAGGA  180
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  196  GGTCGGAATAAAGGCCTTTCGGACCTTGGATGCTACCTCCCAACAGACGTCGCAAGAGGA  255

Query  181  CCACGTGGTCAGCCTAAGAATCAGGGACCACAAGATA  217
            |||||||||||||||||||||||||||||||||||||
Sbjct  256  CCACGTGGTCAGCCTAAGAATCAGGGACCACAAGATA  292



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9701675557


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5