BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936841
Length=559
Score E
Sequences producing significant alignments: (Bits) Value
AT3G30530.1 | Symbols: ATBZIP42, bZIP42 | basic leucine-zipper ... 798 0.0
> AT3G30530.1 | Symbols: ATBZIP42, bZIP42 | basic leucine-zipper
42 | chr3:12139512-12140033 FORWARD LENGTH=522
Length=522
Score = 798 bits (432), Expect = 0.0
Identities = 493/522 (94%), Gaps = 5/522 (1%)
Strand=Plus/Plus
Query 21 ATGCAGCCGCAAACAGACGTTTTCAGCCTCCATAACTACCTAAACTCCTCGAT--TTC-C 77
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 1 ATGCAGCCGCAAACAGACGTTTTCAGCCTCCATAACTACCTAAACTCATCGATACTGCAG 60
Query 78 TCTCCATATCCTTCTAATTTCCCGATATCTACGCCATTTCCAACCAACAGCCAAAACCCG 137
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 61 TCTCCGTATCCTTCTAATTTCCCGATATCTACGCCATTTCCAACCAACGGTCAAAACCCG 120
Query 138 TA-CTCCCTTTACGGATTCCAAAGCCCTACATATAATCCACAATCCATGAGCCTAAGCAG 196
|| || ||| ||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 121 TACCT-CCTCTACGGATTCCAAAGCCCTACAAACAATCCACAATCCATGAGCCTAAGCAG 179
Query 197 CAACAACTCAACATCAGACGAAGCAGAAGAGCAGCAGATGGACAACAATATAATCAACGA 256
|||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct 180 CAACAACTCAACATCAGATGAAGCAGAAGAGCAGCAGACGAACAACAATATAATCAACGA 239
Query 257 GCGGAAGCAGAGAAGGATGATTTCAAACAGAGAATCCGCAAGGAGATCGCGTATGAGGAA 316
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 GCGGAAGCAGAGAAGGATGATTTCAAACCGAGAATCCGCAAGGAGATCGCGTATGAGGAA 299
Query 317 GCAAAGACACCTTGACGAGCTTTGGTCACAAGTTATGTGGTTAAGGATCGAGAATCATCA 376
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 GCAAAGACACCTTGACGAGCTTTGGTCACAAGTGATGTGGTTAAGGATCGAGAATCATCA 359
Query 377 GTTGCTAGATAAGCTTAAAAATCTCTCTGAGTCTCACGAAAAAGTTCTTCAAGAGAATGC 436
|||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 360 GTTGCTTGATAAGCTTAACAATCTCTCTGAGTCTCACGACAAGGTTCTTCAAGAGAATGC 419
Query 437 TCAGCTTAAAGAAGAAACATCTGAGCTTAAGCAAGTGATCAGTGATATGCAAATCCAAAG 496
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 420 TCAGCTTAAAGAAGAAACATTTGAGCTTAAGCAAGTGATCAGCGATATGCAAATTCAAAG 479
Query 497 CCCTTTCTCTTGCTTCAGGGACGATATAATACCCATTGAATA 538
||||||||||||||| || ||||||||||| |||||||||||
Sbjct 480 CCCTTTCTCTTGCTTTAGAGACGATATAATCCCCATTGAATA 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26825034498
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5