BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936855
Length=242
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43720.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 148 2e-35
AT3G30520.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 143 8e-34
AT3G42870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 143 8e-34
> AT1G43720.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G42870.1);
Has 51 Blast hits to 51 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 49; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16495080-16496078
FORWARD LENGTH=945
Length=945
Score = 148 bits (80), Expect = 2e-35
Identities = 126/148 (85%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 96 GATCCAAGATGATTACGATGAATTTAAAAAGGCGGAAGAGATATTTATTGCGCTAGACCT 155
||| |||||||||||||||||||||||||||||||||| ||||||||| |||||| | ||
Sbjct 388 GAT-CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCT 446
Query 156 TCCTAAATATACTAGATTTTACAGGACATGCAT-AAGTACACTTAAAGGAGCAAGCATTA 214
|||||| | ||||||||| | || ||||||| || | ||||||| ||||| || |||
Sbjct 447 TCCTAAGCACACTAGATTTCATTGGGCATGCATTAA-TGCACTTAA-GGAGCTAGTATTT 504
Query 215 TGGCGTAAGTATTTCATTGACATAGCTG 242
|||||||||||||| ||||| ||| |||
Sbjct 505 TGGCGTAAGTATTTGATTGATATAACTG 532
> AT3G30520.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G42870.1);
Has 70 Blast hits to 70 proteins in 9 species: Archae - 0;
Bacteria - 8; Metazoa - 5; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:12130340-12132173
FORWARD LENGTH=1194
Length=1194
Score = 143 bits (77), Expect = 8e-34
Identities = 123/145 (85%), Gaps = 3/145 (2%)
Strand=Plus/Plus
Query 99 CCAAGATGATTACGATGAATTTAAAAAGGCGGAAGAGATATTTATTGCGCTAGACCTTCC 158
||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 720 CCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTACCGCCCTAGATCTTCC 779
Query 159 TAAATATACTAGATTTTACAGGACATGCAT-AAGTACACTTAAAGGAGCAAGCATTATGG 217
|| | ||||||||| | || ||||||| || | ||||||| ||||| || ||| |||
Sbjct 780 CAAGCACACTAGATTTCATTGGGCATGCATTAA-TGCACTTAA-GGAGCTAGTATTTTGG 837
Query 218 CGTAAGTATTTCATTGACATAGCTG 242
| ||||||||||||||| |||||||
Sbjct 838 CCTAAGTATTTCATTGATATAGCTG 862
> AT3G42870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G30520.1);
Has 47 Blast hits to 47 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14949456-14951279
FORWARD LENGTH=939
Length=939
Score = 143 bits (77), Expect = 8e-34
Identities = 124/146 (85%), Gaps = 5/146 (3%)
Strand=Plus/Plus
Query 99 CCAAGATGATTACGATGAATTTAAAAAGGCGGAAGAGATATTTATTGCGCTAGACCTTCC 158
||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||
Sbjct 396 CCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCCCACTAGATCTTCC 455
Query 159 TAAATATACTAGATTTTACAGGACATGCAT-AAGTACACTTAAAGGAGCAAGCATTAT-G 216
|| | ||||||||||| || ||||||| || | ||||| | ||||| || || || |
Sbjct 456 CAAGCACACTAGATTTTATTGGGCATGCATTAA-TGCACTTGA-GGAGCTAGTAT-ATTG 512
Query 217 GCGTAAGTATTTCATTGACATAGCTG 242
|||||||||||||||||| |||||||
Sbjct 513 GCGTAAGTATTTCATTGATATAGCTG 538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10958369282
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5