BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936862
Length=251
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20820.1 | Symbols: | FAD-binding Berberine family protein ... 239 1e-62
> AT4G20820.1 | Symbols: | FAD-binding Berberine family protein
| chr4:11150160-11151758 FORWARD LENGTH=1599
Length=1599
Score = 239 bits (129), Expect = 1e-62
Identities = 194/224 (87%), Gaps = 10/224 (4%)
Strand=Plus/Plus
Query 28 ATGAAACTCCAAAGCTTCCTT-GCCTCTGTATTGATGATCTTCTTCCCTACCATTACCTT 86
|||||| ||||||||||| || | ||||| || ||||||||||| |||| | ||| ||
Sbjct 1 ATGAAATTCCAAAGCTTCTTTAG-CTCTG--TT-CTGATCTTCTTCACTACTAGTACTTT 56
Query 87 ACTTCTATCAATAT-CTCATCCGGTTTCAGCTAACCGATCCAAT-AACGCCGGTTTCCTC 144
|||||||||||| | |||||||||||||||||||||| || ||| || || ||||||||
Sbjct 57 ACTTCTATCAAT-TCCTCATCCGGTTTCAGCTAACCGGTCTAATCAA-TCCAGTTTCCTC 114
Query 145 CAATGTCTCTCTTTTCGGTTTAACGACTCTAACATCGTC-CAAAAGTCATACACACACCA 203
|||||||| ||| | | ||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 115 CAATGTCTATCTCTCCAGTTAAACGACTCCAACATCGTCTCAAAAGTCATACACACACCA 174
Query 204 AACGACACTTATTTATCCTCTGTCTTAGCTTCATCAATACAAAA 247
|||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 175 AACGACACTTCTTTCTCCTCAGTCTTAGCTTCATCAATACAAAA 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11410779023
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5