BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936864

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G34040.1 | Symbols:  | Apoptosis inhibitory protein 5 (API5)...   143    6e-34


> AT2G34040.1 | Symbols:  | Apoptosis inhibitory protein 5 (API5) 
| chr2:14377734-14382494 REVERSE LENGTH=1992
Length=1992

 Score =  143 bits (77),  Expect = 6e-34
 Identities = 94/102 (92%), Gaps = 2/102 (2%)
 Strand=Plus/Plus

Query  44   CTTCC-TCAGCAATGTCAGAGCAGCAATCCGAAGAAGTTCAGCAAATCGAGAAGCTCTAC  102
            ||||| || | |||||||||| | || ||||||||||| |||||||||||||||||||| 
Sbjct  97   CTTCCTTC-GTAATGTCAGAGAACCAGTCCGAAGAAGTCCAGCAAATCGAGAAGCTCTAT  155

Query  103  GAGTTCAGTGAGCGTCTCAATGCCTCCAAGGACAAGTCTCAG  144
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  156  GAGTTCAGTGAGCGTCTCAATGCCTCCAAGGACAAGTCTCAG  197



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8702133723


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5