BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936877
Length=283
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 385 1e-106
AT5G32690.1 | Symbols: | Pseudogene of AT2G29880 | chr5:123322... 243 9e-64
> AT2G29880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G27260.1);
Has 260 Blast hits to 212 proteins in 20 species: Archae -
0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 240; Viruses
- 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:12742536-12743749
FORWARD LENGTH=1131
Length=1131
Score = 385 bits (208), Expect = 1e-106
Identities = 255/278 (92%), Gaps = 1/278 (0%)
Strand=Plus/Plus
Query 6 GATGATGTGAACTATATGGAGATTAATGACAACGAGGTAAATGAAACTTTTCCCAAAGAA 65
||| |||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||
Sbjct 523 GATAATGTGAACCATATGGAGATTAATGACGACGAGGTAAATGAAACACTTCCTAAAGAA 582
Query 66 AAGTTGCCTACTAGGAAAAGATCTAAACCAAATAGTAATGGAGATCCATCAGATTCAATT 125
||| ||||||||||||||||||||||| | ||| |||| ||||||| |||||||||||
Sbjct 583 AAGCTGCCTACTAGGAAAAGATCTAAAACTAATCGTAACGGAGATCGGTCAGATTCAATA 642
Query 126 AATCATGGTGAGTCTTCAGAGAATGTGCTAACTGAAATGATTGGAGTTGGCACTAACATC 185
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 643 AATCATGGTGAGTCTTCAGAGAAGGTGCTATCTGAAATGATTGGAGTTGGCACTAACATC 702
Query 186 ATAAATCTTATTCAACAAAGAGAAGAAAGATATCAAAGAGATGTTGAGTTTAGGGAAACT 245
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 703 ATAAATCTTATTCAACAAAGAGAAGAAAGACATCAAAGAGAAGTTGAGTTTAGGGAAACT 762
Query 246 CAGaaaaaaaaaGAATAATGGTTGGGATGCCATCAAGG 283
|||||||||| ||| |||| ||||||||| |||||||
Sbjct 763 GAGAAAAAAAA-GAACAATGTTTGGGATGCTATCAAGG 799
> AT5G32690.1 | Symbols: | Pseudogene of AT2G29880 | chr5:12332283-12390801
FORWARD LENGTH=888
Length=888
Score = 243 bits (131), Expect = 9e-64
Identities = 208/243 (86%), Gaps = 14/243 (6%)
Strand=Plus/Plus
Query 2 AAGAGATGATGTGAACTATATGGAGATTAATGACAACGAGGTAAATGAAACTTTTCCCAA 61
||| |||| ||||||| |||| ||||| |||||| |||||||||||| || ||
Sbjct 510 AAG-GATGGTGTGAACCATATTGAGATGAATGACGACGAGGTAAATG-AA-------GAA 560
Query 62 AGAAAAGTTGCCTACTAGGAAAAGATCT-AAACCAAATAGTAATGGAGATCCATCAGATT 120
||||||||||| |||||||||||||||| |||| ||| ||||||||||| || ||||||
Sbjct 561 AGAAAAGTTGCATACTAGGAAAAGATCTAAAACTAAA-CGTAATGGAGATTCA-CAGATT 618
Query 121 CAATTAATCATGGTGAGTCTTCAGAGAATGTGCTAACTGAAATGATTGGAGTTGGCACTA 180
|||||||||||||||||||||| |||| ||| || || |||||||||||||||||||||
Sbjct 619 GAATTAATCATGGTGAGTCTTCACAGAAGGTGTTATCTAAAATGATTGGAGTTGGCACTA 678
Query 181 ACATCATAAATCTTATTCAACAAAGAGAAGAAAGATATCAAAGAGA-TGTTGAGTTTAGG 239
|||||||||||||||||||| |||||||||||||| ||| || ||| | ||||||||| |
Sbjct 679 ACATCATAAATCTTATTCAATAAAGAGAAGAAAGACATCCAACAGAAT-TTGAGTTTAAG 737
Query 240 GAA 242
|||
Sbjct 738 GAA 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13019346991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5