BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936884

Length=820
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35540.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   291    1e-77


> AT5G35540.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G27260.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:13722137-13722993 FORWARD LENGTH=570
Length=570

 Score =  291 bits (157),  Expect = 1e-77
 Identities = 268/316 (85%), Gaps = 29/316 (9%)
 Strand=Plus/Plus

Query  408  TTTGAGGATCTTCAACTCATATTTGGATGTGGCTTAGCTACTAGTTGTTCCGCAATTGGA  467
            |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  49   TTTGAGGATCTTCAACTCATATTTGGATGTGGCTTAGCTACTGGTGGTTCCGCAATTGGA  108

Query  468  ATGGGTGAAACCATTGATGCCCGAACCTTTAGAAGTGGGGGGAGTAAAAGAGTGAAAGAT  527
            ||||||||||||| ||||    |   |  | |||       ||||    | | |  ||||
Sbjct  109  ATGGGTGAAACCACTGAT----G---C--TCGAA-------GAGT----G-G-G--AGAT  144

Query  528  AACAAAATTGATGATGAAGTTTTTGAACTATCATCTCAAGAGCCAGTTGCATCACCAAAA  587
            ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||
Sbjct  145  AACAAAATTGATGATGAAGTTTTTGAACTATTATCACAAGAGCTAGTTGCATCACCACAA  204

Query  588  TGTGATATGCCACCCTTTTCA-GACACAAATCCAAAAGGACGGGTAGAAAAACTTCGTCC  646
            |||||||| |||| |||| || | |||||||||||||||||||||||||||||||| |||
Sbjct  205  TGTGATATACCACTCTTTCCATG-CACAAATCCAAAAGGACGGGTAGAAAAACTTCATCC  263

Query  647  AAGGAAGAGGTCTAGAACCTTAGCTACTAGCAATGTAGATAAGCTGAAAACTGATGA-G-  704
            ||||||||||| |||||||| | ||||||||||| ||| ||||||||||| ||| || | 
Sbjct  264  AAGGAAGAGGTTTAGAACCTCATCTACTAGCAATATAGGTAAGCTGAAAAATGACGAAGA  323

Query  705  G-AGGATCCTATGATC  719
            | ||||||||||||||
Sbjct  324  GGAGGATCCTATGATC  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39936146865


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5