BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936896
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44060.1 | Symbols: | F-box/RNI-like superfamily protein | ... 239 4e-62
AT3G42770.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 206 4e-52
AT3G44090.1 | Symbols: | F-box family protein | chr3:15839123-... 187 1e-46
AT3G44096.1 | Symbols: | transposable element gene | chr3:1585... 182 6e-45
> AT3G44060.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:15824938-15826391 REVERSE LENGTH=1284
Length=1284
Score = 239 bits (129), Expect = 4e-62
Identities = 347/446 (78%), Gaps = 39/446 (9%)
Strand=Plus/Plus
Query 355 TTGATCGCTGGATATGTAAGGCCCTGGAACACGGTGTCTCTGAGCTTCATCTACGCATAC 414
|||| |||||||| ||||| ||||||||||||||||||||||| |||||||||| | ||
Sbjct 272 TTGACCGCTGGATTTGTAATGCCCTGGAACACGGTGTCTCTGAACTTCATCTACACCTA- 330
Query 415 A-AAATGAATTGTTGTGGCCGT-G-TGGTGGAT-TCCCATCCGAAGTCTTCACCAGCACA 470
| ||||| | |||||||| | || | | ||||||| |||| |||| |||| ||
Sbjct 331 ATGCATGAA---TCGTGGCCGTGGTTGTTTTCTATCCCATCTAAAGTTTTCAACAGCTCA 387
Query 471 ACACTGGTTAAGCTGTCATTGGGAACAAGATCTCACA-T-CCTTACTATTCCTTGGGATA 528
|||||||||||||||||||||||| | ||| || | | | || | | ||||| |||||
Sbjct 388 ACACTGGTTAAGCTGTCATTGGGATCGAGA-CT-ATACTGCCCAAGTTTTCCTCCGGATA 445
Query 529 CATATCTGCCAGCACTAAAGGTTCT-CTTCCTTGATTCAATATGGTTTAAGGACGATAAA 587
||| ||| ||||||||||||||||| | ||||||||||||| | |||| ||| ||| ||
Sbjct 446 CATCTCTCCCAGCACTAAAGGTTCTGC-TCCTTGATTCAATCTTGTTTCGGGATGATCAA 504
Query 588 CTAT-TGAATGTGTTTCTCGTTGCTTGCCCTGCACTTGAGGACTTAACCATACATGAAGA 646
||| | ||||||||||||| ||| |||||||||||||||||||||||||||||| | |
Sbjct 505 TTATCT-AATGTGTTTCTCGCTGCATGCCCTGCACTTGAGGACTTAACCATACATCAC-A 562
Query 647 GATGTAT-AGAAAGGCAGAGGTCATATCAAGCAAAACCATTAAGAGACTCTCAGTTACC- 704
|||| | | || | ||||||| ||||||| |||||||| ||| ||| ||| |
Sbjct 563 C--GTATCACCCATGC-G---TCATATCCAGCAAAAGCATTAAGAAACTTTCACTTAGCG 616
Query 705 TATAACACTAGTGAATATTTCTATGATTCTGGC-ATTATT-T--CACTTGACACACCGTG 760
| ||||| | || |||| ||| | |||| || ||| | |||||||||| || |
Sbjct 617 T-TAACAGTGGT---TATT---ATGGTGCTGGTTAT-ATTCTTACACTTGACACGCCAAG 668
Query 761 TGATG--GACCTCTACTACTCTGATT 784
|| || |||||||||||||||||||
Sbjct 669 TGTTGTCGACCTCTACTACTCTGATT 694
Score = 171 bits (92), Expect = 1e-41
Identities = 194/242 (80%), Gaps = 12/242 (5%)
Strand=Plus/Plus
Query 48 GATTGTCTTCCAGATGATTGT-CTTATCCAAATCTTGTCCTTACTTCCTACGAAAGAAGC 106
||||||||||||||||| | | ||| |||||||||| | |||||||| |||||||| ||
Sbjct 4 GATTGTCTTCCAGATGA-TCTCCTTGTCCAAATCTTATATTTACTTCCCACGAAAGAGGC 62
Query 107 TGTTTCAACCTCTCTTCTCTCCAAGAGATGGAGGACTCTGTTTGCTTTCAGTCCTAATCT 166
||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||
Sbjct 63 TGTTTCAACCTCTGTTCTCTCCAAGAGATGGAGGACTCTGTTTACTCGCAGTGATAATCT 122
Query 167 AGACTGTAACGATTCCATCTTTTGTCACCCCGAAAAGAGTAAACGGAAGAGCTTCAG-GC 225
|||| | ||||| |||||| | | ||||||| || || | ||||| |||| |
Sbjct 123 TGACTTTCACGATCCCATCTCCGGGCGCCCCGAA--GA-TATCCTAAAGAGTTTCAATG- 178
Query 226 ATTTCGTGTACAATACATTGGCTAATTTGCAAGGCCGTAA-CTGTATAAAGAAGTTCTCA 284
|||||||| ||| | |||| ||| ||| ||||| |||| | |||||| |||||||||
Sbjct 179 ATTTCGTGGACAGTTCATTAGCT--TTT-CAAGGTGGTAAACA-TATAAAAAAGTTCTCA 234
Query 285 CT 286
||
Sbjct 235 CT 236
> AT3G42770.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr3:14867122-14870083 FORWARD LENGTH=1599
Length=1599
Score = 206 bits (111), Expect = 4e-52
Identities = 349/457 (76%), Gaps = 43/457 (9%)
Strand=Plus/Plus
Query 349 TTGTTGTTGATCGCTGGATATGTAAGGCCCTGGAACACGGTGTCTCTGAGCTTCATCTAC 408
||| |||| | || ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 296 TTGATGTTAACCGATGGATATGTAATGCCCTTGAACACGGTGTCTCTGAGCTTCATCTAA 355
Query 409 GCATACAAAATGAATTGTTGTGGCCGTGTGGTGGAT-TCCCATCCGAAGTCTTCACCAGC 467
| || | | | | | | | || || || || ||||||||||| |||||||||||
Sbjct 356 GGAT--AGACT--A-T-ACGAAG-CG-GT-GT-CATCTCCCATCCGAAATCTTCACCAGC 405
Query 468 AC-AACACTGGTTAAGCTGTCATTGGGAACA-AGATCTCACATCCTTA-CTATTCCT--T 522
|| || | |||||||||||||||||| |||| | | | | ||| | | | ||| |
Sbjct 406 ACGAA-ATTGGTTAAGCTGTCATTGGTAACACA-AAGTTGCTTCC-CAGTTGTACCTAAT 462
Query 523 GGGATACATATCTGCCAGCACTAAAGGTTCTCTTCCTTGATTCAATATGGTTT-AAGGAC 581
| || || ||| ||| |||||||||||||||||||||||||||| |||||| ||| |
Sbjct 463 -TG-TATATCTCTCCCATCACTAAAGGTTCTCTTCCTTGATTCAATTTGGTTTGAAGTTC 520
Query 582 GATAAACTATTGAATGTGTTTCTCGTTGCTTGCCCTGCACTTGAGGACTTAACCATACAT 641
| || | || || | |||||| |||||||||||||||||| |||||||||||| ||
Sbjct 521 -CTCAATTCTT-AA--TATTTCTCACTGCTTGCCCTGCACTTGAAGACTTAACCATATAT 576
Query 642 GAAGAG----ATG-TATAGAAAGGC-AGAGG-TCATATCAAGCAAAACCATTAAGAGACT 694
|| || || | ||| || || | | | ||||| ||||||||||||||||||||
Sbjct 577 CAAAAGCCTCATTCTGTAGGAATGCCATACCAT-ATATCTAGCAAAACCATTAAGAGACT 635
Query 695 CTCAGTTACCTATAACACTAGTGAATATTTCTAT-GATTCTGGCATTAT-TTCACTTGAC 752
||| |||||||||| || | ||| ||||| | | |||| |||| ||| || | || ||
Sbjct 636 CTCTGTTACCTATA-CA-T-GTGGTTATTT-TGTTGATTATGGCCTTAAATT-ATTTAAC 690
Query 753 ACACCGTGTGATG--GACCTCTACTACTCTGATTATG 787
|||||| ||| || ||||||||||||||||||||||
Sbjct 691 ACACCGAGTGTTGTCGACCTCTACTACTCTGATTATG 727
> AT3G44090.1 | Symbols: | F-box family protein | chr3:15839123-15840759
FORWARD LENGTH=1350
Length=1350
Score = 187 bits (101), Expect = 1e-46
Identities = 306/399 (77%), Gaps = 37/399 (9%)
Strand=Plus/Plus
Query 412 TACAAAATGAATT-GTTGTGGCCGTGTGGTGGATTCCCATCCGAAGTCTTCACCAGCA-C 469
||||||| | ||| ||||||| || | ||||||||||| | ||||||||||||||| |
Sbjct 407 TACAAAAAG-ATTCTTTGTGGCAGT-T--TGGATTCCCATACAAAGTCTTCACCAGCACC 462
Query 470 AACACTGGTTAAGCTGTCATTGGGAACAAGATCTCA-CAT-CCTTACTATTCCTTGGGAT 527
|| ||||||||||||||||||||||||| || || | | | || | |||||| |||
Sbjct 463 AA-ACTGGTTAAGCTGTCATTGGGAACACGA-CT-AGCCTGCCCAAGAATTCCTCAAGAT 519
Query 528 ACATATCTGCCAG-CACTAAAGGTTCTCTTCCTTGATTCA-ATATGGTTTAAGGACGATA 585
|||| ||| || | | ||||| || ||| | ||||| | | ||||||||| |||| ||
Sbjct 520 ACATCTCTCCCGGTC-CTAAAAGTCCTCCTACTTGAAT-ATATATGGTTTGAGGATAATC 577
Query 586 AACTAT-TGAATGTGTTTCTCGTTGCTTGCCCTGCACTTGAGGACTTAACCATACATGAA 644
|| ||| || |||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 578 AATTATCTG-ATGTGTTTCTCGCAGCTTGCCCTGCACTTGAGGACTTAACCATACATCAC 636
Query 645 GAGATGTATAGAAAGGCAGAGGTCATATCAAGCAAAA-CCATTAAGAGACTCTCAGTTAC 703
| ||| | | || ||||||| ||||||| || |||||| ||||||||||||
Sbjct 637 -A--TGTTTCGCC---CATTCCTCATATCTAGCAAAAACC-TTAAGAAACTCTCAGTTAC 689
Query 704 CTAT-AACACTAG-TGAATAT-TTCTAT-GATTCTGGCA-TTATTTCACTTGACACACCG 758
| || || ||| | | ||| || || | |||| || || || |||||||||| |||
Sbjct 690 C-ATTAATTTTAGCT-ATTATGTTG-ATCG-TTCTA-CAATTCTTACACTTGACACGCCG 744
Query 759 TGTGATG--GACCTCTACTACTCTGATTATGCTTGGCCT 795
|| || ||||||||||||||||||| | || |||||
Sbjct 745 AATGTTGTCGACCTCTACTACTCTGATTTTCCTCGGCCT 783
> AT3G44096.1 | Symbols: | transposable element gene | chr3:15859368-15863166
REVERSE LENGTH=3799
Length=3799
Score = 182 bits (98), Expect = 6e-45
Identities = 287/374 (77%), Gaps = 30/374 (8%)
Strand=Plus/Plus
Query 355 TTGATCGCTGGATATGTAAGGCCCTGGAACACGGTGTCTCTGAGCTTCATCTACGCATAC 414
|||| | || ||||||||||||| || |||| || | ||||||||||| ||| || |
Sbjct 176 TTGACCACTTGATATGTAAGGCCATGCTACACAGTCTTTCTGAGCTTCACCTA--CAGAT 233
Query 415 AAAATGAATTGTTGTGGCCGTGTGGTGGATTCCCATCCGAAGTCTTCACCAGCACAACAC 474
|| || | | |||| | | | || ||||||||| |||| ||||||||||||||||
Sbjct 234 AATATCTA-CATCGTGG-C-T-TAGT---TTCCCATCCCAAGTATTCACCAGCACAACAC 286
Query 475 TGGTTAAGCTGTCATT-GGGAACAAGATC-TCACATCCT-T-ACTATTCCTTGGGATACA 530
|||||||||||||||| ||||| || | ||||| || | | | || || ||||||
Sbjct 287 TGGTTAAGCTGTCATTGGGGAA-AA-CCCAACACAT-CTATGAGT-TTTCTCCTGATACA 342
Query 531 TATCTGCCAGCACTAAAGGTTCTCTTCCTTGATTCAATATGGTTTAAGGACGATAAACTA 590
| ||| |||| ||||||||||||| |||||||||| || |||||| ||| || | | |
Sbjct 343 TCTCTCCCAGTACTAAAGGTTCTCCTCCTTGATTCTATCTGGTTT-TGGA-AAT-ATCCA 399
Query 591 TT-G--AATGTGTTTCTCGTTGCTTGCCCTGCACTTGAGGACTTAACCATACATGA-AGA 646
|| | ||||| ||| ||| |||||||||||||||||||||||||||||||| | | | |
Sbjct 400 TTAGCAAATGTATTTTTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACGTTACA-A 458
Query 647 GA-TGTATAGA--AAGG-CAGAGGTCATATCAAGCAAAACCATTAAGAGACTCTCAGTTA 702
| | | |||| ||| || | || ||||| ||||||| |||||||| |||||||||||
Sbjct 459 TAATTT-TAGAGGAAGTTCATACGTTATATCCAGCAAAAGCATTAAGAAACTCTCAGTTA 517
Query 703 CCTATAACACTAGT 716
| ||| || ||||
Sbjct 518 TCAATAGCAGTAGT 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5