BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936910
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42950.1 | Symbols: | Pectin lyase-like superfamily protein... 2355 0.0
> AT3G42950.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:15015140-15018071 FORWARD LENGTH=1969
Length=1969
Score = 2355 bits (1275), Expect = 0.0
Identities = 1406/1470 (96%), Gaps = 6/1470 (0%)
Strand=Plus/Plus
Query 48 AGACGTTTCCTCTCTTCCCACAAATCTCTCGTCACTGTTTTCTGGATCGCCACTTTCGCT 107
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 250 AGACGTTTCCTCTCTTCTCACAAATCTCTCATCACTGTTTTCTGGATCGCCACTTTCGCT 309
Query 108 TCCTTATTCATCTGGCAATTCGGCGGCGTTTCTACAAATCTCTACACTGGTTTCTCCGTT 167
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||
Sbjct 310 TCCTTATTCATCTGGCAATTCGGCGGCGTTTCCACAAATCTCTACTCCGGTTTCTCCCTT 369
Query 168 TTCT-G--GTCGTCTTCAACAACAACCACCG-CAGCCTCCGGAGAATTCCCGAAGCTCAG 223
|||| | ||||||||||||||| ||||||| | |||||| | |||||| ||||||||
Sbjct 370 TTCTGGTCGTCGTCTTCAACAACCACCACCGTC-TTCTCCGGTGGATTCCCCAAGCTCAG 428
Query 224 ACCTGTAGTTTTCAATTTAACAGACTTTGGTGCCGTCGGCGATGGTGTCACAGTCAACAC 283
|||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 429 ACCTGTAGTTTTCAATCTAACAGACTTCGGTGCTGTCGGCGATGGTGTCACAATCAACAC 488
Query 284 TGAGGCTTTCGAGAGAGCTATTTATAAGATCTCTAAGCTTGCTAAGAAAGGAGGTGGTCA 343
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TGAAGCTTTCGAGAAAGCTATTTATAAGATCTCTAAGCTTGCTAAGAAAGGAGGTGGTCA 548
Query 344 GCTTAATGTTCCTCCTGGTCGTTGGCTCACTGCTCCGTTTAATCTCACTAGTTATATGAC 403
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 ACTTAATGTTCCTCCTGGTCGTTGGCTCACTGCTCCGTTTAATCTCACTAGTTATATGAC 608
Query 404 TCTTTTCCTCGCCGAGAACGCCGAGATTCTCGCTCTTCAGGATGAAAAGTATTGGCCCTT 463
|||||||||| | |||||||| |||||||| |||||||||||||||||||||||| | ||
Sbjct 609 TCTTTTCCTCTCTGAGAACGCTGAGATTCTTGCTCTTCAGGATGAAAAGTATTGGTCTTT 668
Query 464 ACTTCCTCCTTTACCTTCATATGGTTATGGAAGAGAGCATCATGGACCTCGTTATGGAAG 523
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 669 GCTTCCTCCTTTACCTTCATATGGATATGGAAGAGAGCATCATGGACCTCGTTATGGAAG 728
Query 524 TTTCATTCATGGACAGAATCTTAGAGATGTTGTTGTCACAGGGAATAATGGTAGCATCAA 583
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 729 TTTCATTCATGGACAGAATCTTAGAGATGTTGTTGTTACAGGGAATAATGGTAGCATCAA 788
Query 584 CGGTCAGGGGCAAACGTGGTGGAAGAAGTATCGCCAAAAGCTGCTTAACCACACGAGAGG 643
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 CGGGCAGGGACAAACGTGGTGGAAGAAGTATCGCCAAAAGCTGCTTAACCACACGAGAGG 848
Query 644 ACCCCTGGTGCAGATAATGTGGTCAAGTGACATTGTTTTTGCCAATATCACTTTGCGCGA 703
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 849 ACCACTGGTGCAGATAATGTGGTCAAGTGACATTGTTTTTGCCAATATCACTTTGCGTGA 908
Query 704 TTCTCCATTTTGGACGCTTCACCCATATGACTGCAAAAATGTAACAATCACAAATATGAC 763
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 909 TTCTCCATTTTGGACGCTTCACCCATATGACTGCAAAAATGTCACAATCACCAATATGAC 968
Query 764 CATTTTGGCACCTGTGTTCGAAGCCCCAAACACTGATGGTATCGATCCTGATTCGTGTGA 823
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 969 CATTTTGGCGCCTGTGTTCGAAGCCCCAAACACTGATGGTATCGATCCGGATTCGTGTGA 1028
Query 824 GGACATGTTAATCGAGAACTCTTACATTAGCGTTGGGGATGATGGAATCGCCATAAAGAG 883
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1029 GGACATGTTAATCGAGAACTCTTACATCAGCGTTGGGGATGATGGAATCGCAATAAAGAG 1088
Query 884 CGGTTGGGACCAGTATGGAACTACCTATGGACGACCTTCAAAGAACATACTCATCCGCAA 943
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1089 CGGTTGGGACCAGTATGGAACTACATATGGAAAACCTTCAAAGAACATACTCATCCGCAA 1148
Query 944 CCTCATCATCCGCTCCATGGTTAGCGCTGGTATATCAATAGGAAGTGAGATGTCTGGTGG 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 CCTCATCATCCGCTCCATGGTTAGCGCTGGTATATCAATAGGAAGTGAGATGTCTGGTGG 1208
Query 1004 TGTCTCAAATGTCACAGTCGAGAATATTCTGATATGGAGCTCCCGGCGTGGAGTTAGGAT 1063
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1209 TGTCTCGAATATCACAGTCGAGAATATTCTGATTTGGAGCTCCCGGCGTGGAGTTAGGAT 1268
Query 1064 TAAAACCGCACCAGGACGAGGTGGGTATGTCCGGGATATAACATTTCGGAATGTCACATT 1123
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1269 TAAAACCGCACCAGGACGAGGTGGGTATGTCCGGGATATAACATTCCGGAATGTCACATT 1328
Query 1124 GGATGAATTGAGAGTTGGCATTGTCATTAAAACGGACTACAACGAGCACCCAGATGGTGG 1183
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1329 GGATGAGTTGAGAGTTGGTATTGTCATTAAAACAGACTACAACGAGCACCCAGATGGTGG 1388
Query 1184 ATTCAATCCTCAAGCCTTCCCGATACTCGAGAACATAAACTACACCGGGATTTACGGTCA 1243
||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1389 ATTCAATCCCCAAGCCTTTCCGATACTCGAGAACATAAACTACACTGGGATATACGGTCA 1448
Query 1244 AGGAGTGCGTGTACCAGTGCGTATCCAAGGAAGCAAAGAGATTCCGGTTAAAAATGTAAC 1303
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1449 GGGAGTGCGTGTACCAGTGCGTATCCAAGGAAGCAAAGAGATTCCTGTTAAAAATGTAAC 1508
Query 1304 CTTCAGGGACATGTCAGTGGGGATAACATACAAGAAAAAGCACATATTTCAGTGTGCGTA 1363
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1509 CTTCAGGGACATGTCAGTGGGGATAACATACAAGAAAAAGCACATATTCCAGTGTGCGTA 1568
Query 1364 CGTGGAGGGGCGTGTGATAGGCACCATCTTCCCAGCTCCGTGTGAGAACCTTGATAGGTA 1423
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1569 CGTGGAGGGGCGTGTGATAGGCACCATCTTCCCAGCTCCGTGTGATAACCTTGATCGGTA 1628
Query 1424 TGATGAGCAGGAACGGTTGGTGAAGCAATCTGATTCCCAGAATGCAACAGATATAGACTA 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGATGAGCAGGAACGGTTGGTGAAGCAATCTGATTCCCAGAATGCAACAGATATAGACTA 1688
Query 1484 CGAGATATGACCAACAAGAGACATGGGTTT 1513
|||||| ||||||||||||||| |||||||
Sbjct 1689 CGAGATCTGACCAACAAGAGAC-TGGGTTT 1717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74648210415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5