BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936910 Length=1513 Score E Sequences producing significant alignments: (Bits) Value AT3G42950.1 | Symbols: | Pectin lyase-like superfamily protein... 2355 0.0 > AT3G42950.1 | Symbols: | Pectin lyase-like superfamily protein | chr3:15015140-15018071 FORWARD LENGTH=1969 Length=1969 Score = 2355 bits (1275), Expect = 0.0 Identities = 1406/1470 (96%), Gaps = 6/1470 (0%) Strand=Plus/Plus Query 48 AGACGTTTCCTCTCTTCCCACAAATCTCTCGTCACTGTTTTCTGGATCGCCACTTTCGCT 107 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 250 AGACGTTTCCTCTCTTCTCACAAATCTCTCATCACTGTTTTCTGGATCGCCACTTTCGCT 309 Query 108 TCCTTATTCATCTGGCAATTCGGCGGCGTTTCTACAAATCTCTACACTGGTTTCTCCGTT 167 |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || Sbjct 310 TCCTTATTCATCTGGCAATTCGGCGGCGTTTCCACAAATCTCTACTCCGGTTTCTCCCTT 369 Query 168 TTCT-G--GTCGTCTTCAACAACAACCACCG-CAGCCTCCGGAGAATTCCCGAAGCTCAG 223 |||| | ||||||||||||||| ||||||| | |||||| | |||||| |||||||| Sbjct 370 TTCTGGTCGTCGTCTTCAACAACCACCACCGTC-TTCTCCGGTGGATTCCCCAAGCTCAG 428 Query 224 ACCTGTAGTTTTCAATTTAACAGACTTTGGTGCCGTCGGCGATGGTGTCACAGTCAACAC 283 |||||||||||||||| |||||||||| ||||| |||||||||||||||||| ||||||| Sbjct 429 ACCTGTAGTTTTCAATCTAACAGACTTCGGTGCTGTCGGCGATGGTGTCACAATCAACAC 488 Query 284 TGAGGCTTTCGAGAGAGCTATTTATAAGATCTCTAAGCTTGCTAAGAAAGGAGGTGGTCA 343 ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 TGAAGCTTTCGAGAAAGCTATTTATAAGATCTCTAAGCTTGCTAAGAAAGGAGGTGGTCA 548 Query 344 GCTTAATGTTCCTCCTGGTCGTTGGCTCACTGCTCCGTTTAATCTCACTAGTTATATGAC 403 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 549 ACTTAATGTTCCTCCTGGTCGTTGGCTCACTGCTCCGTTTAATCTCACTAGTTATATGAC 608 Query 404 TCTTTTCCTCGCCGAGAACGCCGAGATTCTCGCTCTTCAGGATGAAAAGTATTGGCCCTT 463 |||||||||| | |||||||| |||||||| |||||||||||||||||||||||| | || Sbjct 609 TCTTTTCCTCTCTGAGAACGCTGAGATTCTTGCTCTTCAGGATGAAAAGTATTGGTCTTT 668 Query 464 ACTTCCTCCTTTACCTTCATATGGTTATGGAAGAGAGCATCATGGACCTCGTTATGGAAG 523 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 669 GCTTCCTCCTTTACCTTCATATGGATATGGAAGAGAGCATCATGGACCTCGTTATGGAAG 728 Query 524 TTTCATTCATGGACAGAATCTTAGAGATGTTGTTGTCACAGGGAATAATGGTAGCATCAA 583 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 729 TTTCATTCATGGACAGAATCTTAGAGATGTTGTTGTTACAGGGAATAATGGTAGCATCAA 788 Query 584 CGGTCAGGGGCAAACGTGGTGGAAGAAGTATCGCCAAAAGCTGCTTAACCACACGAGAGG 643 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 789 CGGGCAGGGACAAACGTGGTGGAAGAAGTATCGCCAAAAGCTGCTTAACCACACGAGAGG 848 Query 644 ACCCCTGGTGCAGATAATGTGGTCAAGTGACATTGTTTTTGCCAATATCACTTTGCGCGA 703 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 849 ACCACTGGTGCAGATAATGTGGTCAAGTGACATTGTTTTTGCCAATATCACTTTGCGTGA 908 Query 704 TTCTCCATTTTGGACGCTTCACCCATATGACTGCAAAAATGTAACAATCACAAATATGAC 763 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 909 TTCTCCATTTTGGACGCTTCACCCATATGACTGCAAAAATGTCACAATCACCAATATGAC 968 Query 764 CATTTTGGCACCTGTGTTCGAAGCCCCAAACACTGATGGTATCGATCCTGATTCGTGTGA 823 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 969 CATTTTGGCGCCTGTGTTCGAAGCCCCAAACACTGATGGTATCGATCCGGATTCGTGTGA 1028 Query 824 GGACATGTTAATCGAGAACTCTTACATTAGCGTTGGGGATGATGGAATCGCCATAAAGAG 883 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1029 GGACATGTTAATCGAGAACTCTTACATCAGCGTTGGGGATGATGGAATCGCAATAAAGAG 1088 Query 884 CGGTTGGGACCAGTATGGAACTACCTATGGACGACCTTCAAAGAACATACTCATCCGCAA 943 |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 1089 CGGTTGGGACCAGTATGGAACTACATATGGAAAACCTTCAAAGAACATACTCATCCGCAA 1148 Query 944 CCTCATCATCCGCTCCATGGTTAGCGCTGGTATATCAATAGGAAGTGAGATGTCTGGTGG 1003 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1149 CCTCATCATCCGCTCCATGGTTAGCGCTGGTATATCAATAGGAAGTGAGATGTCTGGTGG 1208 Query 1004 TGTCTCAAATGTCACAGTCGAGAATATTCTGATATGGAGCTCCCGGCGTGGAGTTAGGAT 1063 |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1209 TGTCTCGAATATCACAGTCGAGAATATTCTGATTTGGAGCTCCCGGCGTGGAGTTAGGAT 1268 Query 1064 TAAAACCGCACCAGGACGAGGTGGGTATGTCCGGGATATAACATTTCGGAATGTCACATT 1123 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1269 TAAAACCGCACCAGGACGAGGTGGGTATGTCCGGGATATAACATTCCGGAATGTCACATT 1328 Query 1124 GGATGAATTGAGAGTTGGCATTGTCATTAAAACGGACTACAACGAGCACCCAGATGGTGG 1183 |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1329 GGATGAGTTGAGAGTTGGTATTGTCATTAAAACAGACTACAACGAGCACCCAGATGGTGG 1388 Query 1184 ATTCAATCCTCAAGCCTTCCCGATACTCGAGAACATAAACTACACCGGGATTTACGGTCA 1243 ||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| Sbjct 1389 ATTCAATCCCCAAGCCTTTCCGATACTCGAGAACATAAACTACACTGGGATATACGGTCA 1448 Query 1244 AGGAGTGCGTGTACCAGTGCGTATCCAAGGAAGCAAAGAGATTCCGGTTAAAAATGTAAC 1303 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1449 GGGAGTGCGTGTACCAGTGCGTATCCAAGGAAGCAAAGAGATTCCTGTTAAAAATGTAAC 1508 Query 1304 CTTCAGGGACATGTCAGTGGGGATAACATACAAGAAAAAGCACATATTTCAGTGTGCGTA 1363 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1509 CTTCAGGGACATGTCAGTGGGGATAACATACAAGAAAAAGCACATATTCCAGTGTGCGTA 1568 Query 1364 CGTGGAGGGGCGTGTGATAGGCACCATCTTCCCAGCTCCGTGTGAGAACCTTGATAGGTA 1423 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1569 CGTGGAGGGGCGTGTGATAGGCACCATCTTCCCAGCTCCGTGTGATAACCTTGATCGGTA 1628 Query 1424 TGATGAGCAGGAACGGTTGGTGAAGCAATCTGATTCCCAGAATGCAACAGATATAGACTA 1483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1629 TGATGAGCAGGAACGGTTGGTGAAGCAATCTGATTCCCAGAATGCAACAGATATAGACTA 1688 Query 1484 CGAGATATGACCAACAAGAGACATGGGTTT 1513 |||||| ||||||||||||||| ||||||| Sbjct 1689 CGAGATCTGACCAACAAGAGAC-TGGGTTT 1717 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74648210415 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5