BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936911 Length=589 Score E Sequences producing significant alignments: (Bits) Value AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transpor... 124 7e-28 AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-... 113 2e-24 > AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transport v-SNARE family protein | chr1:9215901-9218010 FORWARD LENGTH=1088 Length=1088 Score = 124 bits (67), Expect = 7e-28 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 399 GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCAGTGAAGAGGCTTGACCAATCAAGA 458 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 548 GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCCGTGGAGAGGCTTGACCAATCAAGT 607 Query 459 AATAGAGTCAGGGAGAGTAGAAGAC 483 | ||| |||||||||||||||||| Sbjct 608 GACAGAATCAGGGAGAGTAGAAGAC 632 > AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100 REVERSE LENGTH=3479 Length=3479 Score = 113 bits (61), Expect = 2e-24 Identities = 68/71 (96%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 275 CGGAATCAGTTGCACTTATTCAA-TATCTGGAACTGGAGTTCACAATAATAAGGCACTAC 333 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 1744 CGGAATCAATTGCACTTATTCAAGTATCTGGAACTGGAGTTCACAATAATAAGGCTCTAC 1803 Query 334 AAGTTGAAGCG 344 ||||||||||| Sbjct 1804 AAGTTGAAGCG 1814 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28332058908 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5