BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936911

Length=589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transpor...   124    7e-28
  AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-...   113    2e-24


> AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transport 
v-SNARE family protein | chr1:9215901-9218010 FORWARD LENGTH=1088
Length=1088

 Score =  124 bits (67),  Expect = 7e-28
 Identities = 79/85 (93%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  399  GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCAGTGAAGAGGCTTGACCAATCAAGA  458
            ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| 
Sbjct  548  GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCCGTGGAGAGGCTTGACCAATCAAGT  607

Query  459  AATAGAGTCAGGGAGAGTAGAAGAC  483
             | ||| ||||||||||||||||||
Sbjct  608  GACAGAATCAGGGAGAGTAGAAGAC  632


> AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100 
REVERSE LENGTH=3479
Length=3479

 Score =  113 bits (61),  Expect = 2e-24
 Identities = 68/71 (96%), Gaps = 1/71 (1%)
 Strand=Plus/Plus

Query  275   CGGAATCAGTTGCACTTATTCAA-TATCTGGAACTGGAGTTCACAATAATAAGGCACTAC  333
             |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct  1744  CGGAATCAATTGCACTTATTCAAGTATCTGGAACTGGAGTTCACAATAATAAGGCTCTAC  1803

Query  334   AAGTTGAAGCG  344
             |||||||||||
Sbjct  1804  AAGTTGAAGCG  1814



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28332058908


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5