BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936920
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-... 211 5e-54
> AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100
REVERSE LENGTH=3479
Length=3479
Score = 211 bits (114), Expect = 5e-54
Identities = 134/143 (94%), Gaps = 4/143 (3%)
Strand=Plus/Plus
Query 141 CAGGAGGATCAAGAAACAGCAGTTCGTCTAGCGAAAACAATGA-AATATTCGTTGAAGGG 199
|||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 1536 CAGGAGGATCAAGAAACAGCAGTTCGTCTAGCGAGCACAATGACAA-ATTCGTTGAAGGG 1594
Query 200 AAGACCAGTGCAGGCTCC-TATATTTGAGGGTAAAGAACCTCCACAATTTGTTGCAGTTT 258
||||||||||||||| || |||||||||||||||||| |||||||||||||||||| |||
Sbjct 1595 AAGACCAGTGCAGGC-CCGTATATTTGAGGGTAAAGAGCCTCCACAATTTGTTGCACTTT 1653
Query 259 TTCAACATATGGTGGTCCTTAAG 281
||||||||||||| |||||||||
Sbjct 1654 TTCAACATATGGTTGTCCTTAAG 1676
Score = 115 bits (62), Expect = 4e-25
Identities = 68/71 (96%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 301 CGGAATCAGTTGCACTTATTCAAGTATCTGGAACTGGAGTTCACAATAGTAAGGCACTAC 360
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1744 CGGAATCAATTGCACTTATTCAAGTATCTGGAACTGGAGTTCACAATAATAAGGCTCTAC 1803
Query 361 AAGTTGAAGCG 371
|||||||||||
Sbjct 1804 AAGTTGAAGCG 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26071522293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5