BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936920 Length=544 Score E Sequences producing significant alignments: (Bits) Value AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-... 211 5e-54 > AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100 REVERSE LENGTH=3479 Length=3479 Score = 211 bits (114), Expect = 5e-54 Identities = 134/143 (94%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 141 CAGGAGGATCAAGAAACAGCAGTTCGTCTAGCGAAAACAATGA-AATATTCGTTGAAGGG 199 |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| Sbjct 1536 CAGGAGGATCAAGAAACAGCAGTTCGTCTAGCGAGCACAATGACAA-ATTCGTTGAAGGG 1594 Query 200 AAGACCAGTGCAGGCTCC-TATATTTGAGGGTAAAGAACCTCCACAATTTGTTGCAGTTT 258 ||||||||||||||| || |||||||||||||||||| |||||||||||||||||| ||| Sbjct 1595 AAGACCAGTGCAGGC-CCGTATATTTGAGGGTAAAGAGCCTCCACAATTTGTTGCACTTT 1653 Query 259 TTCAACATATGGTGGTCCTTAAG 281 ||||||||||||| ||||||||| Sbjct 1654 TTCAACATATGGTTGTCCTTAAG 1676 Score = 115 bits (62), Expect = 4e-25 Identities = 68/71 (96%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 301 CGGAATCAGTTGCACTTATTCAAGTATCTGGAACTGGAGTTCACAATAGTAAGGCACTAC 360 |||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 1744 CGGAATCAATTGCACTTATTCAAGTATCTGGAACTGGAGTTCACAATAATAAGGCTCTAC 1803 Query 361 AAGTTGAAGCG 371 ||||||||||| Sbjct 1804 AAGTTGAAGCG 1814 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26071522293 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5