BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936921

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G43670.1 | Symbols:  | Copper amine oxidase family protein |...   529    1e-149
  AT3G43820.1 | Symbols:  | pseudogene, copper amine oxidase prot...   311    4e-84 


> AT3G43670.1 | Symbols:  | Copper amine oxidase family protein 
| chr3:15567099-15569901 FORWARD LENGTH=2276
Length=2276

 Score =  529 bits (286),  Expect = 1e-149
 Identities = 395/447 (88%), Gaps = 10/447 (2%)
 Strand=Plus/Plus

Query  10    TGGTGGCTAGAATGGCGTGTTC-GATTGGGAACTATGATTATACGTTTGATTGGGAGTTT  68
             |||| ||||||||||| ||||| | ||||||||||||||||||  |||||||||||||||
Sbjct  1280  TGGTAGCTAGAATGGCATGTTCTG-TTGGGAACTATGATTATATTTTTGATTGGGAGTTT  1338

Query  69    CAAATGGATGGTTTGAATCGCGTTATAGTCGCAACCTCGTGGATGTTGATGGTGAAAGGA  128
             |||||||||||| ||| ||| ||||  |||||  ||||| ||||||||||||||||||||
Sbjct  1339  CAAATGGATGGTGTGATTCGTGTTACGGTCGCGGCCTCGGGGATGTTGATGGTGAAAGGA  1398

Query  129   ACATCATAC-ACAAACGTACAAGACTTGAGG-GAGAAAGAAGCTGATTCTGGACCTTTGA  186
             ||  | ||| | ||||||  |||||||| || |||||||| | |||||||||||| ||||
Sbjct  1399  ACGGCTTACGA-AAACGTTGAAGACTTG-GGTGAGAAAGAGGATGATTCTGGACCGTTGA  1456

Query  187   TCTCAGAAACCGTTATAGGAGTTGTCCATGATCATTTCTTATCGTTTCATCTAGACATGG  246
             ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct  1457  TCTCAGAAAACGTTATAGGAGTCGTCCATGATCATTTCATATCGTTTCATCTAGACATGG  1516

Query  247   ATATTGACGGGCT-AGCTAACAACTCCTTCGTTAAGGTTCATCTAGAGAAGCAGAGACTT  305
             | ||||| ||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1517  ACATTGATGGG-TCAGCCAACAACTCCTTCGTTAAGGTTCATCTAGAGAAGCAGAGACTT  1575

Query  306   CCGCCTGGAAAATCAAGGAGAACA-AGTTACTTGAAGGTCAAGAAATATGTAGCCAAGAC  364
             || |||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct  1576  CCACCTGGAGAATCAAGGAGAA-AGAGTTACTTGAAGGTCAAGAAATATGTAGCCAAGAC  1634

Query  365   TGAGAAAGATGCTCATAACAAGTTGAGTATGTACGATCCTTATAAGTTCCATCTTGTGAA  424
             ||||||||||||||| | |||| ||||  ||||||| || ||  ||||||||||||||||
Sbjct  1635  TGAGAAAGATGCTCAGATCAAGATGAGCCTGTACGACCCCTACGAGTTCCATCTTGTGAA  1694

Query  425   CCCTAACTGACAGTCTCATTTAGGGAA  451
             ||||||| |||  ||||  ||||||||
Sbjct  1695  CCCTAACCGACTTTCTCGGTTAGGGAA  1721


> AT3G43820.1 | Symbols:  | pseudogene, copper amine oxidase protein 
family, similar to SP|Q43077 Amine oxidase (copper-containing) 
precursor (EC 1.4.3.6) {Pisum sativum}; contains Pfam 
profile PF01179: Copper amine oxidase, enzyme domain; blastp 
match of 57% identity and 2.6e-48 P-value to GP|5733089|gb|AAD49420.1|AF172681_1|AF172681 
amine oxidase {Canavalia lineata} 
| chr3:15668523-15669776 REVERSE LENGTH=1254
Length=1254

 Score =  311 bits (168),  Expect = 4e-84
 Identities = 275/323 (85%), Gaps = 22/323 (7%)
 Strand=Plus/Plus

Query  135  TACACAAACGTACAAGACTTGAGG-GAGAAAGAAGCTGATTCTGGACCTTTGATCTCAGA  193
            ||||||||||||||||||||| || |||||||| ||| ||||||||| |||||||| | |
Sbjct  406  TACACAAACGTACAAGACTTG-GGTGAGAAAGACGCTAATTCTGGACTTTTGATCTAAAA  464

Query  194  AACCGTTATAGGAGTTGTCCATGATCATTTCTTATCGTTTCATCTAGACATGGATATTGA  253
            || |||||||||||| ||||| |   |  ||  |   ||||||||||||||||| |||||
Sbjct  465  AAACGTTATAGGAGTGGTCCACG---A--TC--A---TTTCATCTAGACATGGACATTGA  514

Query  254  CGGGCTAGCTAACAACTCCTTCGTTAAGGTTCATCTAGAGAAGCAGAGACTTCCGCCTGG  313
            ||||| |||||| |||| |  ||||||| ||||||||||||||||||||||||| |||||
Sbjct  515  CGGGCCAGCTAAGAACT-C--CGTTAAGATTCATCTAGAGAAGCAGAGACTTCCACCTGG  571

Query  314  AAAATCAAGGAGAACA-AGTTACTTGAAGGTCAAGAAATATGTAGCCA--AG-ACTGAGA  369
            |||||||||||||| | ||||||||||||||||||||||||||||||   || ||||| |
Sbjct  572  AAAATCAAGGAGAA-AGAGTTACTTGAAGGTCAAGAAATATGTAGCCTGCAGGACTGATA  630

Query  370  AAGATGCTCATA-ACAAGTTGAGTATGTACGATCCTTATAAGTTCCATCTTGTGAACCCT  428
            |||||||||| | | ||||||||  ||||||| |||||  ||||||||||||||||||||
Sbjct  631  AAGATGCTCAGATA-AAGTTGAGCCTGTACGACCCTTACGAGTTCCATCTTGTGAACCCT  689

Query  429  AACTGACAGTCTCATTTAGGGAA  451
            ||| | |||||| | ||| ||||
Sbjct  690  AACCGGCAGTCTTAGTTAAGGAA  712



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21665399819


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5