BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936937
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43250.1 | Symbols: | Family of unknown function (DUF572) ... 785 0.0
> AT3G43250.1 | Symbols: | Family of unknown function (DUF572)
| chr3:15216713-15217462 FORWARD LENGTH=750
Length=750
Score = 785 bits (425), Expect = 0.0
Identities = 545/604 (90%), Gaps = 4/604 (1%)
Strand=Plus/Plus
Query 24 ATGGGAGAACGCAAAAACCTAAACAAGTATCATCCGCCAGATTTTGATCCGAAGAAGATA 83
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGAACGCAAAAACCTAAACAAGTATTATCCGCCAGATTTTGATCCGAAGAAGATA 60
Query 84 CATCGCATCAAGAAACCGAAGAACCAGCAGAAAAAGATTCGATTTATGCTTCCAGTGCGT 143
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 61 CACCGCATCAAGAAACCGAAGAACCAGCAGAAAAAGATTAGATTTATGCTTCCAGTTCGT 120
Query 144 GTTCGCTGCAACACATGTGGTAATTACATGTCGGAAGGCACCAAATTCAATTGCCGTGAA 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 GTTCGCTGCAACACATGTGGTAATTACATGTCGGAAGGCACCAAATTCAATTGCCGTCAA 180
Query 204 GAAGACGTCATCACCGAGACGTATCTAGGTATTAAAATCCATAGGTTCTACATTAAGTGC 263
||||||||||||||||||||||| |||||| | |||||||| ||||||||||| ||||||
Sbjct 181 GAAGACGTCATCACCGAGACGTACCTAGGTCTAAAAATCCACAGGTTCTACATCAAGTGC 240
Query 264 AATACATGCTTGGCAGAGGTAACAATTAAAACCGATCCAAGGAACGAGAGTTATACTGTC 323
| | |||||| |||||| | ||||| ||||||||||||| |||| | |||||||||||
Sbjct 241 ACCAAATGCTTAGCAGAGTTGACAATCAAAACCGATCCAAAGAACCATAGTTATACTGTA 300
Query 324 GAATCAGGTGCAACTTGCCTTTATAATGGACACGAAAAGGTAGAGAAGAAGAGGCATGAG 383
||||||||||||| ||||||||||||||| || || | | ||| || ||| | | ||
Sbjct 301 GAATCAGGTGCAAGTTGCCTTTATAATGGCCATGAGGACATTGAGGAGGAGAAGAA-GAA 359
Query 384 GAAACA-GAAAACGCATTGGAATCATTAGAGAAGAGAACTGTGGTATCTAAAAGAGAGAT 442
||| || ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 360 GAAGCATGAAAACGCATTAGAATCCCTAGAGAACAGAACTGTGGTATCTAAAAGAGAGAT 419
Query 443 TGAAGTTATGGCTGGGCTTGATGAGTTGAAA-TCTATGAAGTCTAGACGAGCCTCAGTGA 501
||||||||||||| | ||||||||||| ||| || ||||||||||||||||||||| |||
Sbjct 420 TGAAGTTATGGCTAGTCTTGATGAGTT-AAAGTCGATGAAGTCTAGACGAGCCTCATTGA 478
Query 502 GCGTAGACTCCATGCTTGAGGCTTTGAGTAGAAGaaaaaaaCAAGAAGAAGAGAACGTGG 561
| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || |
Sbjct 479 GTGTAGACTACATGCTTGAGGATTTGAGTAGAAGAAAAAAACAAGAAGAAGAGAATGTTG 538
Query 562 AGGAAGAGTTGCTCATTAAGTCGATACAATTTGGTAAGCGGAGTAGGATTGATGAAGAGA 621
||||||| ||||| |||||||||||| ||||||||||| ||| ||| | |||||||||||
Sbjct 539 AGGAAGAATTGCTTATTAAGTCGATAAAATTTGGTAAGAGGATTAGAACTGATGAAGAGA 598
Query 622 AAAA 625
||||
Sbjct 599 AAAA 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5