BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936938
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43270.1 | Symbols: | Plant invertase/pectin methylesterase... 2447 0.0
> AT3G43270.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr3:15222125-15225460 REVERSE LENGTH=2197
Length=2197
Score = 2447 bits (1325), Expect = 0.0
Identities = 1529/1629 (94%), Gaps = 8/1629 (0%)
Strand=Plus/Plus
Query 1 CAAGATTCTACCGGAGATAGATGGCGAAGTTCCTACAAATGGGTTCATCAATCTTCTTCT 60
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 317 CAAGATTCTACCTGAGATAGATGGCGAAGTTCCGACAAATGGGTTCATCAATCTTCTTCC 376
Query 61 TCTTTCTTATCACCGTTTCTTTATGTTCCGCCCACAAAGAGGCGTTTTCTTCTACTGGGT 120
|||||||||||| | || |||||||||||||||||||| ||||||||||| ||| | |
Sbjct 377 TCTTTCTTATCATAATCTCATTATGTTCCGCCCACAAAGAAGCGTTTTCTTCAACT-GAT 435
Query 121 -TGGTTCAAATGGAGTGCTTGAAAGTCCCGCCGTTAGAGTTCGCCCAAGCGGCCAAAACC 179
| ||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||
Sbjct 436 CTTGTTCAAATGGAGTGCTTGAGAGTCCCACCGTTAGAGTTTGCTGAAGCGGCCAAAACC 495
Query 180 GTCGTTGATGCTAT-CCAAAAGGCGGTAGCTATAGTTTCAAACTTCGACAAGAAAGTCGG 238
||||| || ||||| ||||| |||||||||||||| || || ||||||||||||| |||
Sbjct 496 GTCGTCGACGCTATAACAAAA-GCGGTAGCTATAGTGTCCAAGTTCGACAAGAAAGCCGG 554
Query 239 GAAGTCACGAGTGTCCAATGCGATTCTTGATTGTGTTGATCTTCTTGATTCTGCCGCCGA 298
|||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 555 GAAGTCGCGAGTCTCCAATGCGATTGTTGATTGTGTTGATCTTCTTGATTCTGCCGCCGA 614
Query 299 AGAGCTTTCTTGGATCATCTCTGCCTCTCAAAATCCCAACGGTAAAGACAACAGTACAGG 358
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 615 AGAGCTTTCTTGGATCATCTCTGCCTCTCAATCCCCCAACGGTAAAGACAATAGCACAGG 674
Query 359 AGACGTGGGTTCGGATCTAAGGACATGGATAAGCGCCGCACTTTCTAACCAGGACACGTG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 675 AGACGTGGGTTCGGATCTAAGGACATGGATAAGCGCCGCACTTTCTAACCAGGACACATG 734
Query 419 TCTTGACGGCTTCGATGGTACTAATGGAATTATCAAAAAGATAGTGGCTGGTGGTCTTAG 478
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 735 TCTTGACGGTTTCGAGGGTACTAATGGAATTATCAAAAAGATAGTGGCCGGTGGTCTTAG 794
Query 479 C-CGCGTCGGTACGACCGTCCGAAATCTACTAACGATGGTTCACTCTCCTCCCTCTAAGC 537
| | || ||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 795 CAAG-GTTGGTACGACCGTTCGGAATTTACTAACGATGGTTCACTCTCCTCCCTCTAAGC 853
Query 538 CCAAACCCAAGCCCATTAAAGCCCACACGATGACAAAAGCTCATAGTGGCTTCAGTAAGT 597
||||||| ||||||||||| ||||| || ||||| |||||||||||||||||||||||||
Sbjct 854 CCAAACCTAAGCCCATTAAGGCCCAGACAATGACGAAAGCTCATAGTGGCTTCAGTAAGT 913
Query 598 TTCCCTCGTGGGTTAAACCTGGTGATCGGAAGTTGTTGCAAACTGATAACATAACGGTTG 657
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TCCCCTCATGGGTTAAACCCGGTGATCGGAAGTTGTTGCAAACTGATAACATAACGGTTG 973
Query 658 CTGACGCGGTTGTAGCCGCAGACGGGACCGGGAATTTCACGACGATAAGTGACGCAGTGT 717
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 974 CTGACGCGGTTGTAGCCGCAGACGGGACCGGAAATTTCACGACGATAAGTGACGCGGTGT 1033
Query 718 TGGCTGCACCGGATTATAGTACCAAAAGATATGTGATACATGTGAAAAGAGGTGTATATG 777
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 1034 TGGCTGCACCGGACTATAGTACCAAAAGATATGTCATACATGTAAAAAGAGGTGTGTATG 1093
Query 778 -AGGAGAATGTGGAGATTAAAAAGAAGAAATGGAACATTATGATTGTTGGTGATGGCATC 836
| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1094 TA-GAGAATGTGGAGATTAAAAAGAAGAAATGGAACATTATGATGGTTGGTGACGGCATC 1152
Query 837 GATGCCACCGTGATCACCGGTAACCGGAGTTTCATCGACGGCTGGACTACTTTCCGGTCA 896
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1153 GATGCCACCGTGATCACGGGTAACCGGAGTTTCATCGACGGCTGGACTACTTTCCGATCT 1212
Query 897 GCTACTTTTGCTGTGAGCGGTAGAGGGTTTATTGGGCGCGATATCACCTTCCAAAACACA 956
||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1213 GCTACATTTGCTGTGAGCGGTAGAGGATTTATTGCACGCGATATCACCTTCCAAAACACA 1272
Query 957 GCAGGACCGGAAAAGCACCAAGCGGTCGCAATCCGATCCGATACGGATCTCGGGGTCTTT 1016
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 GCAGGACCGGAAAAACACCAAGCGGTCGCAATCCGATCCGATACGGATCTCGGGGTCTTT 1332
Query 1017 TATCGATGCGCGATGAGAGGTTACCAAGACACTCTCTATGCCCACTCAATGCGTCAATTC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TATCGATGCGCGATGAGAGGTTACCAAGACACTCTCTATGCCCACTCAATGCGTCAATTC 1392
Query 1077 TTTAGAGAATGCATTATAACCGGCACTGTAGACTTTATATTCGGAGACGCCACTGCCGTA 1136
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1393 TTTAGAGAATGCATTATAACAGGCACTGTAGACTTTATATTCGGAGACGCCACAGCAGTA 1452
Query 1137 TTCCAAAGTTGCCAAATCAAAGCCAAACAAGGCCTTCCAAACCAGAAGAATAGCATCACG 1196
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 TTCCAAAGCTGCCAAATCAAAGCCAAACAAGGCCTTCCAAACCAGAAGAATAGCATCACG 1512
Query 1197 GCGCAAGGACGTAAGGATCCAAATGAGCCAACAGGATTCACATTCCAATTCAGCAATATA 1256
|| ||||||||||||||||||||||||||||| || |||||| |||||||||||||||||
Sbjct 1513 GCTCAAGGACGTAAGGATCCAAATGAGCCAACCGGTTTCACAATCCAATTCAGCAATATA 1572
Query 1257 GTGGCTGATACCGACCTACTTCCAAACTCAAATATTACGGCTACTTACTTAGGTCGACCG 1316
| ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||
Sbjct 1573 GCAGCTGATACCGACCTACTTCTAAACTTAAATACTACGGCTACTTACTTAGGTCGGCCG 1632
Query 1317 TGGAAATTATATTCTAGAACGGTGTTCATGCAAAACTACATGAGCGATGCAATCAATCCC 1376
|||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1633 TGGAAACTATATTCTAGGACGGTGTTCATGCAAAACTACATGAGTGATGCAATCAACCCC 1692
Query 1377 GAAGGATGGCTCGAATGGAACGGAAATTTTGCGTTGGATACATTATATTATGGTGAGTAT 1436
| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1693 GTAGGATGGCTTGAATGGAATGGAAATTTTGCGTTGGATACATTATATTATGGTGAGTAT 1752
Query 1437 ATGAATAGCGGACCGGGTGCTAGTCTTGACCGCCGTGTTAAGTGGCCAGGATACCATGTG 1496
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 ATGAATAGCGGACCGGGGGCTAGTCTTGACCGCCGTGTTAAGTGGCCAGGATACCATGTG 1812
Query 1497 TTGAACACTCCGGCCGAGGCTAATAATTTTACGGTATCTCAACTCATACAAGGGAACCTG 1556
||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1813 TTGAATACTTCGGCCGAGGCTAATAATTTTACAGTATCTCAACTCATACAAGGGAACTTG 1872
Query 1557 TGGTTACCATCTACTGGTATCACGTTCATTGCTGGTCTAGTCTCGTAAATTAATCATGTT 1616
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 TGGTTACCATCAACTGGTATCACGTTCATTGCTGGTCTAGTCTCGTAAATTAATCATGTT 1932
Query 1617 TGATCGAAT 1625
|||||||||
Sbjct 1933 TGATCGAAT 1941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80270671455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5