BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936941
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43440.1 | Symbols: JAZ11, TIFY3A | jasmonate-zim-domain pro... 606 8e-173
> AT3G43440.1 | Symbols: JAZ11, TIFY3A | jasmonate-zim-domain protein
11 | chr3:15367596-15370059 FORWARD LENGTH=1076
Length=1076
Score = 606 bits (328), Expect = 8e-173
Identities = 516/601 (86%), Gaps = 35/601 (6%)
Strand=Plus/Plus
Query 168 TAGAATGTTCGATGGTGTTCCTGCACAAAAGGTTCAAGAAATCATTCGCATCGCTGCTGC 227
|||| | ||| ||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 236 TAGAGTCTTCAATGGTGTCCCTGCACAAAAGGTTCAAGAAATCATTCGCATCGCTTTTGC 295
Query 228 TGCTAAAGAGATAAAGAATGTGACTGGTATCAATCCAGCGCTGAACAGAGCTGTTTCTTT 287
|| |||| ||| ||||||||||| |||||||||||||| |||||||||||| |||| ||
Sbjct 296 TGGTAAACAGACGAAGAATGTGACCGGTATCAATCCAGCACTGAACAGAGCTCTTTC-TT 354
Query 288 CTCAGGCACATCAACTGTAGCTGATCTTCCGATTGCTAGGAGACGTTCGCTTCAAAGATT 347
| | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 355 -T------C-TCAACTGTAGCTGATCTTCCAATTGCTAGGAGACGTTCGCTTCAAAGATT 406
Query 348 TCTTGAGAAAAGACGGGACAGGTCCACAAAGCCAGATGCTTCAACAATCCTTCCAAGTCA 407
||| ||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct 407 TCTCGAGAAGAGACGGGACAGGTCCACGAAGCCAGATGGTTCAATGATCCTTCCAAGTCA 466
Query 408 ACTTACTATTATCTTTGGTGGGAGTTTTAGCGTATTTGATGGAATTCCAGCTGAAAAGGT 467
||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 467 ACTAACCATTATTTTTGGTGGGAGTTTTAGCGTATTTGATGGTATTCCAGCTGAAAAGGT 526
Query 468 TCAAGAAATCCTGTGTATTGCTGCTGCTGCTAAAGCCACTGAGACAAAGAATTTGACCAG 527
||||||||| ||| ||| |||||||| ||||||||||||||||||| |||||||||||
Sbjct 527 TCAAGAAATTCTGCATATCGCTGCTGCAGCTAAAGCCACTGAGACAATTAATTTGACCAG 586
Query 528 TATCAATCCAGCATTGAAGAGAGCTCTTTCTTTCTCAAGCACATCAACAGTACCTTTACC 587
||| ||||||||||| ||||||||| |||| ||||||| | ||||||||||| ||| |
Sbjct 587 TATAAATCCAGCATTAAAGAGAGCTATTTCATTCTCAAACGCATCAACAGTAGCTTG-C- 644
Query 588 AGGGGCTTACATATCGACAGCTGATGTGCCAATTGCTAGGAGACGTTCGCTTCAAAGATT 647
| | | | ||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 645 -G----T-A--T--CGACAGCAGATGTGCCAATTGCTAGGAGACGTTCACTTCAAAGATT 694
Query 648 TCTTGAGAAAAGACGGGA-CAGATTTGTCCATACGAACCCTTACTCTGCTACAACCTCGA 706
| |||||||||||||| | | |||||||||| ||||| |||||||||||||| || |||
Sbjct 695 TTTTGAGAAAAGACGGCATC-GATTTGTCCACACGAAGCCTTACTCTGCTACGACTTCGG 753
Query 707 AAGCAGA-------GAAA--A-CC--ATGGTGACATGAGCTCCAAGGCTGTAAGCTAACC 754
||||||| |||| | || || ||||||||||||||||| |||||||||||||
Sbjct 754 AAGCAGACAAAAATGAAACCAGCCCCATTGTGACATGAGCTCCAAGACTGTAAGCTAACC 813
Query 755 T 755
|
Sbjct 814 T 814
Score = 128 bits (69), Expect = 7e-29
Identities = 138/170 (81%), Gaps = 9/170 (5%)
Strand=Plus/Plus
Query 397 CTTCCAAGTCAACTTACTATTATCTTTGGTGGGAGTTTTAGCGTATTTGATGGAATTCCA 456
||| ||| ||||||||||||||||||||||||||||| ||| || || |||| | ||
Sbjct 199 CTT-CAACTCAACTTACTATTATCTTTGGTGGGAGTTGTAGAGTCTTCAATGGTGTCCCT 257
Query 457 GCTGAAAAGGTTCAAGAAATCCTGT-GTATTGCTGCTGCTGCTAAAGCCACTGAGACAAA 515
|| ||||||||||||||||| | | | || ||| ||||| |||| | | || | ||
Sbjct 258 GCACAAAAGGTTCAAGAAATCAT-TCGCATCGCTTTTGCTGGTAAA-C-A--GA--CGAA 310
Query 516 GAATTTGACCAGTATCAATCCAGCATTGAAGAGAGCTCTTTCTTTCTCAA 565
|||| ||||| |||||||||||||| |||| |||||||||||||||||||
Sbjct 311 GAATGTGACCGGTATCAATCCAGCACTGAACAGAGCTCTTTCTTTCTCAA 360
Score = 95.3 bits (51), Expect = 8e-19
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 606 AGCTGATGTGCCAATTGCTAGGAGACGTTCGCTTCAAAGATTTCTTGAGAAAAGACGGGA 665
||||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 365 AGCTGATCTTCCAATTGCTAGGAGACGTTCGCTTCAAAGATTTCTCGAGAAGAGACGGGA 424
Query 666 CAG 668
|||
Sbjct 425 CAG 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36670927310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5