BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936960
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48150.1 | Symbols: | MADS-box transcription factor family ... 750 0.0
AT1G50780.1 | Symbols: | 2Fe-2S ferredoxin-like superfamily pr... 645 0.0
> AT1G48150.1 | Symbols: | MADS-box transcription factor family
protein | chr1:17785397-17786368 FORWARD LENGTH=972
Length=972
Score = 750 bits (406), Expect = 0.0
Identities = 735/880 (84%), Gaps = 77/880 (9%)
Strand=Plus/Plus
Query 1 TCTCTGTCTTCTCTCTGGAGCCAACATGGCCGTCTTCGTAACCTCTCCGGACGAGAACTC 60
||| || |||||||| ||||||||||| ||||| || ||||| ||||| |||||||||||
Sbjct 144 TCTTTGCCTTCTCTCCGGAGCCAACATAGCCGTTTTTGTAACTTCTCCTGACGAGAACTC 203
Query 61 CGACGTTGTTTACTCCTTCTCCGGCTACTCTCCTGCCTCTGAAATTGTTGATTGTTACCT 120
||| || ||||| || ||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 204 CGATGTCGTTTATTCATTCTCGGGCTACTCTCATGCCTCTGAAATTGTTGACTGTTACCT 263
Query 121 CAACGGCAAGTCTCCTCCCAAG-CT--TATTAACTCTCAATCCAAGTTAGGGTTTTGGTG 177
|||| |||||||||||||||| || ||||||| || ||| | || | |||||||||
Sbjct 264 CAACAACAAGTCTCCTCCCAAGACTACTATTAACCCTGAAT-C-AGCCA-AGTTTTGGTG 320
Query 178 GGAAGA-CCCTGATCTATATCGTTATTGTGACGATCTCTCTGAGTTAA-ATACCATCGAA 235
|||||| ||| ||||| || ||| ||||||||||||| |||||||||| | | |||||||
Sbjct 321 GGAAGAGCCC-GATCTTTACCGTGATTGTGACGATCTGTCTGAGTTAAGA-ATCATCGAA 378
Query 236 GATCGTATGATGAGAACGAGGAAGCATCTGATGGATTGTCTTGAGAAGAAAGAAAAATCA 295
|||||| |||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 379 GATCGTTTGATGAGAACGAAGAAGCATCTCATGGATTATCTTGAGAAGAAAGAAAAATCA 438
Query 296 CAATTTGTTTCTAATTCCGATCAAAACCCTAACACCGACGAGATATTCAATAATGGTGGG 355
|| | ||||||||| ||||||||||||||||||| || | | | | |||||
Sbjct 439 CACTCTGTTTCTAAATCCGATCAAAACCCTAACA---AC--G--A--C----A--GTGGG 483
Query 356 tcttcttcttcttcttctCAAATTGCTTCTGATTTAGGCCAAAACCCTAGTACCTCT-TC 414
||||||||||| ||||||||||||||||||||||| || |||||||||||||||| | ||
Sbjct 484 TCTTCTTCTTCGTCTTCTCAAATTGCTTCTGATTTTGGTCAAAACCCTAGTACCT-TGTC 542
Query 415 TCCGTCTTCCTCACAGATTGTTTCTTTTGATCAGAACTCTTACACCTCCCTTGGCAAGTT 474
||||||||||| | | ||||||||||||||||||||||||| | || || | | |
Sbjct 543 TCCGTCTTCCTTAAAAATTGTTTCTTTTGATCAGAACTCTT--A-CT-CC-T--C-A--- 591
Query 475 ATGTGGCGAGCCTTCGTCACAAG-T--TACTTGTTATGATCAAAACCCTAACTTCTCTGT 531
| | |||||||||||||||| | |||||||| ||||||||||||| ||||||||
Sbjct 592 CT-T---GAGCCTTCGTCACAAGTTACTACTTGTTTTGATCAAAACCCTGTTTTCTCTGT 647
Query 532 T-G--GCGAGTAC-TCATATGATCAATCTCGTTACTTGGTGAATGAAGATCCTGGATTTG 587
| | |||||| | |||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 648 TGGCAGCGAGT-CATCATCTGATCAATCTCGTTACTTGGTGAATGAAGATTCTGGATTTG 706
Query 588 TTGACTG---CTTATGTGAAACAGAGGAGGAGAATAACGGAATGAGTCTTCCTCAAGAAA 644
||||| | |||||||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct 707 TTGACGGCCTCTTATGTGAAACAGAGGAAGAGAATAACGGAATGCGTCTTCCCCAAGAAA 766
Query 645 CACAGACACCATCGTTGTTCAC---TGAGGATCAGAGCTTTTGGGAAAATCTATTTAAGG 701
|||| |||| | || ||||||| ||||||||||||||||||||||| ||| |
Sbjct 767 CACAAACACAACCGATGTTCACAGAGGAGGATCAGAGCTTTTGGGAAAACCTA-----G- 820
Query 702 ATGAAGACAACGTGTTTGGTCTTCTTAA---CGACAAC---CTTGAGGTTCCTCTTCAAG 755
||| ||| |||||||||||||| |||| ||||||| |||||||||||||||||||
Sbjct 821 ATGTCGACGACGTGTTTGGTCTTTTTAAGGACGACAACAATCTTGAGGTTCCTCTTCAAG 880
Query 756 ATCATTCCTCAACCAACGAAGAAGAAGACGAGTTTAT-GATCGATATCAGTGAATTCTTA 814
|||||||||||||||||||||| || |||||| || |||||| || ||||||| ||||
Sbjct 881 ATCATTCCTCAACCAACGAAGACGA---CGAGTT-ATTGATCGACATAAGTGAATACTTA 936
Query 815 AGCGAAGAAGAAGAATTCGAATGGCCCCTGTTTTAGTTAG 854
|||||||||| | | | ||||| ||| ||||||||||||
Sbjct 937 AGCGAAGAAGCA-A-TG-GAATG-CCCATGTTTTAGTTAG 972
> AT1G50780.1 | Symbols: | 2Fe-2S ferredoxin-like superfamily
protein | chr1:18821267-18823077 FORWARD LENGTH=972
Length=972
Score = 645 bits (349), Expect = 0.0
Identities = 710/869 (82%), Gaps = 86/869 (10%)
Strand=Plus/Plus
Query 7 TCTTCTCTCTGGAGCCAACATGGCCGTCTTCGTAACCTCTCCGGACGAGAACTCCGACGT 66
||||||||| | ||||||| ||||| || ||||| ||||| || ||||||||||||||
Sbjct 165 TCTTCTCTC--CAACCAACATAGCCGT-TTTGTAACTTCTCCTGATGAGAACTCCGACGT 221
Query 67 TGTTTACTCCTTCTCCGGCTACTCTCCTGCCTCTGAAATTGTTGATTGTTACCTCAACGG 126
||||| || ||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 222 CGTTTATTCATTCTCGGGCTACTCTCATGCCTCTGAAATTGTTGACTGTTACCTCAACGG 281
Query 127 CAAGTCTCCTCCCAAG-CT--TATTAACTCTC-AATCCAAGT-TAGGGTTTTGGTGGGAA 181
|||||||||||||||| || ||||||| | | ||| | | | | |||||||||||||
Sbjct 282 CAAGTCTCCTCCCAAGACTACTATTAAC-CCCGAAT-C-A-TCCA-AGTTTTGGTGGGAA 336
Query 182 GACCCTGATCTATATC-GTTATTGTGACGATCTCTCTGAGTTAA-ATACCATCGAAGATC 239
|||||| |||| || | || ||||||||||| | |||||||||| | | |||||||||||
Sbjct 337 GACCCTAATCTCTA-CGGTGATTGTGACGATTTGTCTGAGTTAAGA-ATCATCGAAGATC 394
Query 240 GTATGATGAGAACGAGGAAGCATCTGATGGATTGTCTTGAGAAGAAAGAAAAATCACAAT 299
|| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 395 GTCTGATGAGAACGAAGAAGCATCTCATGGATTGTCTTGAGAAGAAAGAAAAATCATACT 454
Query 300 TTGTTTCTAATTCCGATCAAAACCCTAACACCGAC-G-AGATATTCAATAATGGTGGGtc 357
||||||||| || |||||||||||||| | | || | | | ||| | | | ||
Sbjct 455 CTGTTTCTAAATCTGATCAAAACCCTAAGAACAACGGTGGGTCTTC--T--T-CTTCTTC 509
Query 358 ttcttcttcttcttctCAAATTGCTTCTGATTTAGGCCAAAACCCTAGTACCTCTTCTCC 417
||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 510 TTCTTCTTCTTCTTCTCAAATTGCTTCTGATTTTGGTCAAAACCCTAGTA--------CC 561
Query 418 GTCTTCCTCACAGATTGTTTCTTTTGATCAGAACTCTTACACCTCCCTTGGCAAGTTATG 477
|||| ||| | | || ||||||||| |||||| | || || | | | |
Sbjct 562 -TCTT-CTC-C-----G-TT-TTTTGATCACCACTCTT--A-CT-CC-T--C--G--CT- 599
Query 478 TGGCGAGCCTTCGTCACAAG-T--TACTTGTTATGATCAAAACCCTAACTTCTCTGTT-G 533
| |||||||||||||||| | |||||||| |||||||||||||| ||||||||| |
Sbjct 600 T---GAGCCTTCGTCACAAGTTACTACTTGTTTTGATCAAAACCCTATTTTCTCTGTTGG 656
Query 534 --GCGAGTAC-TCATATGATCAATCTCGTTACTTGGTGAATGAAGATCCTGGATTTGTTG 590
|||||| | |||| |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 657 CAGCGAGT-CATCATCTGATCAATTTCGTTACTTGGTGAATGAAGATGCTGGATTTGTTG 715
Query 591 ACTGCTTATGTGAAACAGAGGAGGAGAATAACGGAATGAGTCTTCCTCAAGAAACACAGA 650
||||||||| |||||||||||||||||| ||| |||||| | | || ||||||||||| |
Sbjct 716 ACTGCTTATTTGAAACAGAGGAGGAGAAGAACAGAATGATTGTACCCCAAGAAACACAAA 775
Query 651 CACCATCGTTGTTCACT---GAGGATCAGAGCTTTTGGGAAAATCTATTTAAGGATGAAG 707
||| | || ||||| || ||||||||||||||||||||||| | | | |||| |
Sbjct 776 CACAACCGATGTTCTCTGAGGAGGATCAGAGCTTTTGGGAAAA-C---CT-A-GATGTCG 829
Query 708 ACAACGTGTTTGGTCTTCTT-A--ACG--A-CAACCTTGAGGTTCCTCTTCAAGATCATT 761
|| |||||||||||||| || | ||| | |||||||||||||||||||||||||||||
Sbjct 830 ACGACGTGTTTGGTCTTTTTAACGACGACACCAACCTTGAGGTTCCTCTTCAAGATCATT 889
Query 762 CCTCAACCAACGAAGAAGAAGACGAGTTTATGATCGATATCAGTGAATTCTTAAGCGAAG 821
||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 890 CCTCAACCAACGAAGAAGA---CGAGTTTATGATTGATATCAGTGAATACTTAAGCGAAG 946
Query 822 AAGAAGAATTCGAATGGCCCCTGTTTTAG 850
||| | | | ||||||||| ||||||||
Sbjct 947 AAGCA-A-TG-GAATGGCCCATGTTTTAG 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5