BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936973
Length=506
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zin... 464 3e-130
AT3G43180.1 | Symbols: | RING/U-box superfamily protein | chr3... 145 5e-34
AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zin... 106 2e-22
AT3G45500.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 89.8 2e-17
> AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger domain | chr3:15646460-15647566 FORWARD LENGTH=1041
Length=1041
Score = 464 bits (251), Expect = 3e-130
Identities = 277/290 (96%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 1 CCAAAACCGACGTGCGCGGGATTAATGTCGAAAACCGAGCTTTCTACCTCAACTGAAGAA 60
||||| |||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 727 CCAAACCCGAGGTGCTCGGGATTAATGTCGAAAACCGAGCTCTCTACATCAACTGAAGAA 786
Query 61 GATGGAGGTAGTAGGAGTTGTTGTGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAA 120
|||| | ||| ||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 787 GATGTAAGTACTAGGACTTGTTGTGTTAAATGCGGTGAACCCTTTTGCATCAACTGCAAA 846
Query 121 GTTCCGTGGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAATCCTACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GTTCCGTGGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAATCCTACA 906
Query 181 AAAAATGATATAAAGCTAAAAGTTTTGGCAAATCAGCAAAAGTGGCGTCAATGTGGAAAG 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 907 AAAAATGATATAAAGCTAAAAGTTTTGGCAAATCAGCAAAAGTGGAGTCAATGTGCAAAG 966
Query 241 TGCCAACACATGATTGCACGTATCGAAGGATGCAACGTAGTAATCTGCAG 290
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 967 TGCCAACACATGATTGCACGTATCGAAGGATGCAACGTAATAATCTGCAG 1016
> AT3G43180.1 | Symbols: | RING/U-box superfamily protein | chr3:15178043-15178937
FORWARD LENGTH=576
Length=576
Score = 145 bits (78), Expect = 5e-34
Identities = 86/90 (96%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 72 TAGGAGTTGTTGTGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCA 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 419 TAGGAGATGTTGTGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCATGGCA 478
Query 132 TAGTAACTTGTCATGCGATGATTACAAGAG 161
|||| |||||||||||| ||||||||||||
Sbjct 479 TAGTGACTTGTCATGCGGTGATTACAAGAG 508
> AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16683204-16684592 REVERSE LENGTH=1208
Length=1208
Score = 106 bits (57), Expect = 2e-22
Identities = 113/139 (81%), Gaps = 7/139 (5%)
Strand=Plus/Plus
Query 25 ATGTCGAAAACCGAGCTTTCT-ACCTCAACTGAAGAAGATGGAGGTAGTAGGAGTTGTTG 83
|||||||| || ||||| || | || ||||||||||||||| || |||||| |||||
Sbjct 754 ATGTCGAAGACGGAGCTCACTGA-ATCTACTGAAGAAGATGGA-GT--TAGGAGATGTTG 809
Query 84 -TGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCATAGTAACTTGT 142
| | |||||| | ||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 810 CTAT-AAATGCCGCAAACACTTTTGTATTAACTGCAAAGTTCCGTGGCATAGTAACTTGT 868
Query 143 CATGCGATGATTACAAGAG 161
| ||| | || |||||||
Sbjct 869 CGTGCAAGGAACACAAGAG 887
> AT3G45500.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1);
Has 48 Blast hits to 46 proteins in 4 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:16688418-16689693 REVERSE LENGTH=606
Length=606
Score = 89.8 bits (48), Expect = 2e-17
Identities = 77/90 (86%), Gaps = 6/90 (7%)
Strand=Plus/Plus
Query 204 TTTGGCAAATCAGCAAAA-GTGGCGTCAATGTGGAAAGTGCCAACACATGATTGCACGTA 262
||||||||||||| |||| |||||||||||||||||||||||||||||||| | || |
Sbjct 418 TTTGGCAAATCAG-AAAATGTGGCGTCAATGTGGAAAGTGCCAACACATGACCGAACTT- 475
Query 263 TC-GAAGGATGCAACGTAGTAATCT-GCAG 290
|| |||||||||| | ||||| || ||||
Sbjct 476 TCAGAAGGATGCATCAAAGTAA-CTTGCAG 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24162624707
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5