BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936984
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50780.1 | Symbols: | 2Fe-2S ferredoxin-like superfamily pr... 418 5e-116
AT1G48150.1 | Symbols: | MADS-box transcription factor family ... 405 4e-112
AT5G27130.1 | Symbols: AGL39 | AGAMOUS-like 39 | chr5:9546547-9... 340 1e-92
> AT1G50780.1 | Symbols: | 2Fe-2S ferredoxin-like superfamily
protein | chr1:18821267-18823077 FORWARD LENGTH=972
Length=972
Score = 418 bits (226), Expect = 5e-116
Identities = 335/383 (87%), Gaps = 25/383 (7%)
Strand=Plus/Plus
Query 618 GAGCCTTCGTCACAAG-T--TACTTGTTATGATCAAAACCCTATCTTCTCTGTT-G--GC 671
|||||||||||||||| | |||||||| ||||||||||||||| ||||||||| | ||
Sbjct 601 GAGCCTTCGTCACAAGTTACTACTTGTTTTGATCAAAACCCTATTTTCTCTGTTGGCAGC 660
Query 672 GAGTCATTATGTGATCAATCTCGTTACTTGGTGAATGAAGATCCTGGATTTGTTAACTGC 731
||||||| || |||||||| |||||||||||||||||||||| ||||||||||| |||||
Sbjct 661 GAGTCATCATCTGATCAATTTCGTTACTTGGTGAATGAAGATGCTGGATTTGTTGACTGC 720
Query 732 TTATGTGAAACAGGGGAGGAGAATAACGGAATGAGTGTAGCCCAAGAAACACAAACACAA 791
|||| |||||||| ||||||||| ||| |||||| |||| ||||||||||||||||||||
Sbjct 721 TTATTTGAAACAGAGGAGGAGAAGAACAGAATGATTGTACCCCAAGAAACACAAACACAA 780
Query 792 TCGATGCTCAT-TGA--A-GATCAGAGCTTTTGGGAAAACCTACTTAAAGATGACGACAA 847
||||| || | ||| | |||||||||||||||||||| | | | ||||| |||| |
Sbjct 781 CCGATGTTC-TCTGAGGAGGATCAGAGCTTTTGGGAAAA-C--C-T--AGATGTCGACGA 833
Query 848 CGTGTTTGGTCTTCTTAACGAC-A-A-CAACCTTGAGGTTCCTCTTCAAGATCGAT-CCT 903
||||||||||||| |||||||| | | |||||||||||||||||||||||||| || |||
Sbjct 834 CGTGTTTGGTCTTTTTAACGACGACACCAACCTTGAGGTTCCTCTTCAAGATC-ATTCCT 892
Query 904 CAACCAACGAAGAAGACGAGTTTATGATCGATATCAGTGAATTCTTAAGCGAAGAAGAAG 963
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct 893 CAACCAACGAAGAAGACGAGTTTATGATTGATATCAGTGAATACTTAAGCGAAGAAGCA- 951
Query 964 AATTCGAATGGCCCCTGTTTTAG 986
| | ||||||||| ||||||||
Sbjct 952 A-TG-GAATGGCCCATGTTTTAG 972
Score = 329 bits (178), Expect = 3e-89
Identities = 279/326 (86%), Gaps = 13/326 (4%)
Strand=Plus/Plus
Query 185 TCTTCTCTCCGGAGCCAACATCGCCGTCTTCGTAACCTCTCCGGACGAGAACTCCGACAT 244
|||||||||| | ||||||| ||||| || ||||| ||||| || |||||||||||| |
Sbjct 165 TCTTCTCTCC--AACCAACATAGCCGT-TTTGTAACTTCTCCTGATGAGAACTCCGACGT 221
Query 245 TGTTTACTCCTTCTCCGGCTACTCTCCTGCCTCTGAAATTGTTGATTGTTACCTCAACGC 304
||||| || ||||| |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 222 CGTTTATTCATTCTCGGGCTACTCTCATGCCTCTGAAATTGTTGACTGTTACCTCAACGG 281
Query 305 CAAGTCTCCTCCC-A-A-TATTATTAACCCTC-AATCCAAGT-TAGGGTTTTGGTGGGAA 359
||||||||||||| | | || ||||||||| | ||| | | | | |||||||||||||
Sbjct 282 CAAGTCTCCTCCCAAGACTACTATTAACCC-CGAAT-C-A-TCCA-AGTTTTGGTGGGAA 336
Query 360 GACCCTGATCTCTACCTTTATTGTGACGATCTCTCTGAGTTAAGTATCATTGAAGATCGT 419
|||||| |||||||| | ||||||||||| | ||||||||||| ||||| |||||||||
Sbjct 337 GACCCTAATCTCTACGGTGATTGTGACGATTTGTCTGAGTTAAGAATCATCGAAGATCGT 396
Query 420 ATGATGAGAACGAAGAAGCATCTGTTGGATTGTCTTGAGAAGAAAGAAAAATCACAATTT 479
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |
Sbjct 397 CTGATGAGAACGAAGAAGCATCTCATGGATTGTCTTGAGAAGAAAGAAAAATCATACTCT 456
Query 480 CTTTCGAAATCCGATCAAAACCCTAA 505
|||| ||||| ||||||||||||||
Sbjct 457 GTTTCTAAATCTGATCAAAACCCTAA 482
> AT1G48150.1 | Symbols: | MADS-box transcription factor family
protein | chr1:17785397-17786368 FORWARD LENGTH=972
Length=972
Score = 405 bits (219), Expect = 4e-112
Identities = 402/482 (83%), Gaps = 46/482 (10%)
Strand=Plus/Plus
Query 527 TGGTCAAAACCCTAGCACCTCT-TCTCCGTATTCCTCACACATTGTTTCTTTTGATCAGA 585
||||||||||||||| |||| | ||||||| ||||| | | |||||||||||||||||||
Sbjct 519 TGGTCAAAACCCTAGTACCT-TGTCTCCGTCTTCCTTAAAAATTGTTTCTTTTGATCAGA 577
Query 586 ACTCTTACTCCTCCCTTGACAAGTTATGTGGCGAGCCTTCGTCACAAG-T--TACTTGTT 642
|||||||||||| | || | | |||||||||||||||| | ||||||||
Sbjct 578 ACTCTTACTCCT--C---AC------T-T---GAGCCTTCGTCACAAGTTACTACTTGTT 622
Query 643 ATGATCAAAACCCTATCTTCTCTGTT-G--GCGAGTCATTATGTGATCAATCTCGTTACT 699
||||||||||||| | ||||||||| | ||||||||| || |||||||||||||||||
Sbjct 623 TTGATCAAAACCCTGTTTTCTCTGTTGGCAGCGAGTCATCATCTGATCAATCTCGTTACT 682
Query 700 TGGTGAATGAAGATCCTGGATTTGTTAACTG---CTTATGTGAAACAGGGGAGGAGAATA 756
|||||||||||||| ||||||||||| || | |||||||||||||| ||| |||||||
Sbjct 683 TGGTGAATGAAGATTCTGGATTTGTTGACGGCCTCTTATGTGAAACAGAGGAAGAGAATA 742
Query 757 ACGGAATGAGTGTAGCCCAAGAAACACAAACACAATCGATGCTCATTGA--A-GATCAGA 813
|||||||| || | |||||||||||||||||||| ||||| ||| || | |||||||
Sbjct 743 ACGGAATGCGTCTTCCCCAAGAAACACAAACACAACCGATGTTCACAGAGGAGGATCAGA 802
Query 814 GCTTTTGGGAAAACCTACTTAAAGATGACGACAACGTGTTTGGTCTTCTTAA---CGACA 870
||||||||||||||||| |||| |||| |||||||||||||| |||| |||||
Sbjct 803 GCTTTTGGGAAAACCTA------GATGTCGACGACGTGTTTGGTCTTTTTAAGGACGACA 856
Query 871 ACAACCTTGAGGTTCCTCTTCAAGATCGAT-CCTCAACCAACGAAGAAGACGAGTTTAT- 928
|||| |||||||||||||||||||||| || |||||||||||||||| |||||||| ||
Sbjct 857 ACAATCTTGAGGTTCCTCTTCAAGATC-ATTCCTCAACCAACGAAGACGACGAGTT-ATT 914
Query 929 GATCGATATCAGTGAATTCTTAAGCGAAGAAGAAGAATTCGAATGGCCCCTGTTTTAGTT 988
|||||| || ||||||| |||||||||||||| | | | ||||| ||| ||||||||||
Sbjct 915 GATCGACATAAGTGAATACTTAAGCGAAGAAGCA-A-TG-GAATG-CCCATGTTTTAGTT 970
Query 989 AG 990
||
Sbjct 971 AG 972
> AT5G27130.1 | Symbols: AGL39 | AGAMOUS-like 39 | chr5:9546547-9547553
FORWARD LENGTH=1007
Length=1007
Score = 340 bits (184), Expect = 1e-92
Identities = 373/463 (81%), Gaps = 17/463 (4%)
Strand=Plus/Plus
Query 53 ATCTGACTGCACGATGAGGAA-AAGAGGAACAAAGAG-AAAGATTGAAATTAAGAAACGC 110
|||||| | |||||||| ||| || |||||||||| | ||| || ||||| ||||||||
Sbjct 95 ATCTGATTCCACGATGATGAAGAA-AGGAACAAAGCGCAAA-ATCGAAATAAAGAAACGA 152
Query 111 TTCACTAAACAACAACGATCGGTGGCTTGCAGC-AAACGCCGTCCAACACTCTTCTCCAA 169
|| ||| | |||||| | ||| ||||| | |||||||||| ||| | || |||||
Sbjct 153 GAAACCAAAGAGCAACGAGCCGTGACTTGC-TCTAAACGCCGTCAAACTGTTTTTTCCAA 211
Query 170 AGCCGCTGATCTCTGTCTTCTCTCCGGAGCCAACATCGCCGTCTTCGTAACCTCTCCGGA 229
|||||| |||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 212 AGCCGCCGATCTCTGTCTTATCTCCGGTGCTAACATCGCCGTCTTCGTAACCTCTCCCTC 271
Query 230 CGAGAACTCCGACATTGTTTACTCCTTCTCCGGCTACT-CTCCTGCCT-CTGAAATTGTT 287
||| | ||||| |||| || ||||||||||| |||| || |||||| | ||||| | |
Sbjct 272 CGATAGTTCCGATGTTGTCTATTCCTTCTCCGGTTACTCCT-CTGCCTAC-GAAATCGCT 329
Query 288 GATTGTTACCTCAA-CGCCAAGTCTCCTCCCAATATTATTAACCC--TC-AATCCAAGTT 343
||||||||||| || || |||| |||| ||||| ||| ||||||| | |||||| |
Sbjct 330 GATTGTTACCTAAATCG-CAAGCCTCCACCCAAGATTGTTAACCCGGCCGGATCCAAACT 388
Query 344 AGGGTTTTGGTGGGAAGACCCTGATCTCTACCTTTATTGTGACGATCTCTCTGAGTTAAG 403
||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 389 AGGATTTTGGTGGGAAGACCCTGATCTCTACCATTCGTGTGATGATCTCTCTGAGTTAAG 448
Query 404 TATCATTGAAGATCGTATG-ATGAGAACGAAGAAGCATCTGTTGGATTGTCTTGAGAAGA 462
|| || || |||||| | | ||||| |||||||||| || ||| ||| |||||||||
Sbjct 449 CATTATCGAGGATCGTTTACA-GAGAATGAAGAAGCATGTGATGGCTTGCCTTGAGAAGG 507
Query 463 AAGAAAAATCACAATTTCTTTCGAAATCCGATCAAAACCCTAA 505
|||||||||| ||| || |||| | | ||| |||||||||||
Sbjct 508 AAGAAAAATCTCAACTTGTTTCTAGTTTCGACCAAAACCCTAA 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5