BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936985

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G54450.1 | Symbols:  | Major facilitator superfamily protein...   259    6e-69


> AT3G54450.1 | Symbols:  | Major facilitator superfamily protein 
| chr3:20158534-20162005 FORWARD LENGTH=1736
Length=1736

 Score =  259 bits (140),  Expect = 6e-69
 Identities = 173/188 (92%), Gaps = 6/188 (3%)
 Strand=Plus/Plus

Query  22   ATGGTATTGTATGTGATGGCGGTTGGAGAAGGAGGGCATAAACCATGCGTCACGACCTTC  81
            |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct  355  ATGGCATTGTATGTGATGGCGGTTGGAGAAGGAGGGCATAAACCATGCGTCATGACCTTT  414

Query  82   GCAGCTGACCTGTTTGGAGAGGCCAATCCGGAAGAGATTAAAGCATCAAAGACATCTTTC  141
            |||||||||| |||||||||||||||| |||||||||  || ||| ||||||||||||||
Sbjct  415  GCAGCTGACCAGTTTGGAGAGGCCAATGCGGAAGAGA--AA-GCAGCAAAGACATCTTTC  471

Query  142  TCTTCAATTATTGGTATATGGCCATCGTCCTCGCTTCTTCCGTAGCTGTTCTTCC-CTCA  200
            | | ||||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||
Sbjct  472  T-T-CAATTATTGGTATATGGCCATAGTCCTCGCTTCTTCCATAGCTGTTCTTGCACTCA  529

Query  201  TCTTCATT  208
            ||||||||
Sbjct  530  TCTTCATT  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9305749935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5