BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936986
Length=322
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54450.1 | Symbols: | Major facilitator superfamily protein... 340 4e-93
> AT3G54450.1 | Symbols: | Major facilitator superfamily protein
| chr3:20158534-20162005 FORWARD LENGTH=1736
Length=1736
Score = 340 bits (184), Expect = 4e-93
Identities = 209/221 (95%), Gaps = 1/221 (0%)
Strand=Plus/Plus
Query 51 GTTGTGGAGATGGCCGAGACATTTGCGTTCTACGGTCGTGCAAGCAACCTAATAACGTTT 110
||||||||||| || |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 70 GTTGTGGAGATAGCAGAGAGATTTGCGTTCTACGGTCTTGCAAGCAACCTAATAACGTTT 129
Query 111 CTATCAAACGAGCTTGGCCAGTCCACGACCACCGCAGCCAAAACACATCAACACATGGAT 170
||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 130 CTAACAAACGAACTTGGCCAGTCCACGGCCACCGCAGCCAAAA-ACATCAACACATGGAT 188
Query 171 CGGTGTTTCTTGCATGTTCCCCATTCTCGGGACGTTTCTAGCCGACTCTATCCTAGGCCG 230
||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 189 CGGTGTTTCTTGCATGTTCCCCATTCTCGGGGCGTTTCTAGCTGACTCCATCCTAGGCCG 248
Query 231 CTTCAAAACCGTTCTCTTGACTTCTTTCATCTATCTCTTGG 271
||||||||||||||||||||| |||||||||||||||||||
Sbjct 249 CTTCAAAACCGTTCTCTTGACCTCTTTCATCTATCTCTTGG 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14979789202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5