BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936995

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52342.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   230    6e-60
  AT3G11165.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  71.3    4e-12


> AT1G52342.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:19492255-19492769 
REVERSE LENGTH=515
Length=515

 Score =  230 bits (124),  Expect = 6e-60
 Identities = 132/136 (97%), Gaps = 0/136 (0%)
 Strand=Plus/Plus

Query  65   AGCTTCCACGAAATTACCCCGGTGGCAGAAATGACGGTGGCAACAGATGTGGAAGCCACC  124
            ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct  109  AGCTTCCACGAAAATACTCCGGTGGCAGAAGTGACGGTGGCAACAGATGTGGAAGCCACC  168

Query  125  GCTGGTCACCGTAGCGGTGGTGACGGTGGCGATGGAAAGAAGAAGTGTGTGTGTTCACCG  184
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  169  GCTGGTCACCGTAGCGGTGGTGACGGTGGCGGTGGAAAGAAGAAGTGTGTGTGTTCACCG  228

Query  185  TCGAAGCATCCAAGAT  200
            ||||||||||||||||
Sbjct  229  TCGAAGCATCCAAGAT  244


> AT3G11165.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 2 Blast hits 
to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:3497946-3499090 REVERSE LENGTH=456
Length=456

 Score = 71.3 bits (38),  Expect = 4e-12
 Identities = 40/41 (98%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  24   TGTTCGTTTCGTCGCCGCAACTACCTGCTGCTGCGGCAGAC  64
            |||||||||||||||||||||||||||| ||||||||||||
Sbjct  329  TGTTCGTTTCGTCGCCGCAACTACCTGCGGCTGCGGCAGAC  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10707030537


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5