BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937003 Length=215 Score E Sequences producing significant alignments: (Bits) Value AT3G44010.1 | Symbols: | Ribosomal protein S14p/S29e family pr... 302 1e-81 AT3G43980.1 | Symbols: | Ribosomal protein S14p/S29e family pr... 294 2e-79 > AT3G44010.1 | Symbols: | Ribosomal protein S14p/S29e family protein | chr3:15799931-15801200 REVERSE LENGTH=483 Length=483 Score = 302 bits (163), Expect = 1e-81 Identities = 189/202 (94%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1 TTCCTCTGTGAGCAAATCGACGAAATGGGTCACTCTAATGTCTGGAACTCTCATCCAAAG 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 45 TTCCTCTGTGAGCAAATCGACGAAATGGGTCACTCTAATGTATGGAACTCTCATCCGAAG 104 Query 61 AAGTATGGCCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCCCACGGGCTGATCAGG 120 ||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||| || Sbjct 105 AAGTACGGTCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCGCACGGTCTGATCCGG 164 Query 121 AAGTATGGTTTGAACTGTTGCAGACAATGTTTCCGCAGCAACGCTAAGGAGATCGGATTC 180 ||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||| Sbjct 165 AAGTATGGTTTGAACTGCTGCAGACAGTGTTTCCGTAGCAACGCTAAGGAGATTGGATTC 224 Query 181 ATCAAGTACCGTTAATGAAGCA 202 || ||||||||||||| ||||| Sbjct 225 ATTAAGTACCGTTAATCAAGCA 246 > AT3G43980.1 | Symbols: | Ribosomal protein S14p/S29e family protein | chr3:15778402-15779311 REVERSE LENGTH=400 Length=400 Score = 294 bits (159), Expect = 2e-79 Identities = 183/195 (94%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 1 TTCCTCTGTGAGCAAATCGACGAAATGGGTCACTCTAATGTCTGGAACTCTCATCCAAAG 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 53 TTCCTCTGTGAGCAAATCGACAAAATGGGTCACTCTAATGTCTGGAACTCTCATCCGAAG 112 Query 61 AAGTATGGCCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCCCACGGGCTGATCAGG 120 ||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 113 AAGTACGGTCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCACACGGGCTTATCAGG 172 Query 121 AAGTATGGTTTGAACTGTTGCAGACAATGTTTCCGCAGCAACGCTAAGGAGATCGGATTC 180 |||||||||||||| || |||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 173 AAGTATGGTTTGAATTGCTGCAGACAGTGTTTCCGCAGTAACGCCAAGGAGATCGGATTC 232 Query 181 ATCAAGTACCGTTAA 195 || |||||||||||| Sbjct 233 ATTAAGTACCGTTAA 247 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9601140059 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5