BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937003
Length=215
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44010.1 | Symbols: | Ribosomal protein S14p/S29e family pr... 302 1e-81
AT3G43980.1 | Symbols: | Ribosomal protein S14p/S29e family pr... 294 2e-79
> AT3G44010.1 | Symbols: | Ribosomal protein S14p/S29e family
protein | chr3:15799931-15801200 REVERSE LENGTH=483
Length=483
Score = 302 bits (163), Expect = 1e-81
Identities = 189/202 (94%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1 TTCCTCTGTGAGCAAATCGACGAAATGGGTCACTCTAATGTCTGGAACTCTCATCCAAAG 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 45 TTCCTCTGTGAGCAAATCGACGAAATGGGTCACTCTAATGTATGGAACTCTCATCCGAAG 104
Query 61 AAGTATGGCCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCCCACGGGCTGATCAGG 120
||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct 105 AAGTACGGTCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCGCACGGTCTGATCCGG 164
Query 121 AAGTATGGTTTGAACTGTTGCAGACAATGTTTCCGCAGCAACGCTAAGGAGATCGGATTC 180
||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 165 AAGTATGGTTTGAACTGCTGCAGACAGTGTTTCCGTAGCAACGCTAAGGAGATTGGATTC 224
Query 181 ATCAAGTACCGTTAATGAAGCA 202
|| ||||||||||||| |||||
Sbjct 225 ATTAAGTACCGTTAATCAAGCA 246
> AT3G43980.1 | Symbols: | Ribosomal protein S14p/S29e family
protein | chr3:15778402-15779311 REVERSE LENGTH=400
Length=400
Score = 294 bits (159), Expect = 2e-79
Identities = 183/195 (94%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 1 TTCCTCTGTGAGCAAATCGACGAAATGGGTCACTCTAATGTCTGGAACTCTCATCCAAAG 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 53 TTCCTCTGTGAGCAAATCGACAAAATGGGTCACTCTAATGTCTGGAACTCTCATCCGAAG 112
Query 61 AAGTATGGCCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCCCACGGGCTGATCAGG 120
||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 113 AAGTACGGTCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCACACGGGCTTATCAGG 172
Query 121 AAGTATGGTTTGAACTGTTGCAGACAATGTTTCCGCAGCAACGCTAAGGAGATCGGATTC 180
|||||||||||||| || |||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 173 AAGTATGGTTTGAATTGCTGCAGACAGTGTTTCCGCAGTAACGCCAAGGAGATCGGATTC 232
Query 181 ATCAAGTACCGTTAA 195
|| ||||||||||||
Sbjct 233 ATTAAGTACCGTTAA 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9601140059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5