BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937006

Length=701
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44005.1 | Symbols:  | pseudogene, hypothetical protein | ch...   261    6e-69


> AT3G44005.1 | Symbols:  | pseudogene, hypothetical protein | 
chr3:15795417-15796016 REVERSE LENGTH=600
Length=600

 Score =  261 bits (141),  Expect = 6e-69
 Identities = 289/354 (82%), Gaps = 35/354 (10%)
 Strand=Plus/Plus

Query  361  CAAAACTTGATCAGTTTCTTCAGTTCAGAGGAGCTTCAAGCTCTATCAGCTTCTACAATG  420
            |||||||||   ||||||| ||||||||| |||||||||||||||| |||| ||||||||
Sbjct  185  CAAAACTTG---AGTTTCTCCAGTTCAGAAGAGCTTCAAGCTCTATGAGCTGCTACAATG  241

Query  421  ATTCCGTTAGAGACATTTTAC--G--G--------GCGGATAGTACGATTTCACCACCA-  467
            ||| |||||||||||||| ||  |  |        | |||||||| |||||  ||  || 
Sbjct  242  ATTACGTTAGAGACATTTCACGAGACGAAAAATAAGTGGATAGTATGATTTTGCC-GCAG  300

Query  468  TGTAAGCAGGAGAATATAATCCGAGATGTATTCATTTTGAAACAACTAGGCGTGCCTCAA  527
             |||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  301  GGTAAGCAGGACAATGTAATCCGAGATGTATTTATTTTGAAACAACTAGGTGTGCCTCAA  360

Query  528  GAGTTGTTAATCCCCTTGCTCAACTTCAATACCTCTTTCAATGGaaaagaaaaatacaaa  587
            |||||||||||   |   ||   |||    |      |||||||||||||| ||  ||||
Sbjct  361  GAGTTGTTAAT---C---CT---CTT---GA------TCAATGGAAAAGAAGAAGCCAAA  402

Query  588  aaaTCCATCAAGGAGGTCATTGAGGAGAGTTTTGATCCGACCACCTTAAAAATTTTCCAA  647
            ||| |||||||||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct  403  AAAGCCATCAAGGAGGTCATTGAGAAGGGTTTTGATCCGACCACCTTAAAGATTTTCCAA  462

Query  648  GCTCTGCGCGTTTTTTACTTATTGAGGGACTAAACAATAGAAGAAAAAGCCAAT  701
            ||| |||| || |||||| |||||||||||||||||||||||||||| | ||||
Sbjct  463  GCTTTGCGTGTGTTTTACGTATTGAGGGACTAAACAATAGAAGAAAACGTCAAT  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33958283372


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5