BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937007

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39320.1 | Symbols:  | Cysteine proteinases superfamily prot...   126    1e-28
  AT5G03330.1 | Symbols:  | Cysteine proteinases superfamily prot...  95.3    4e-19


> AT2G39320.1 | Symbols:  | Cysteine proteinases superfamily protein 
| chr2:16417477-16418517 REVERSE LENGTH=685
Length=685

 Score =  126 bits (68),  Expect = 1e-28
 Identities = 91/102 (89%), Gaps = 2/102 (2%)
 Strand=Plus/Plus

Query  218  GATAAAAAGTGATGGAAATTGCCAGTTCCGTGCTTTAGCTGATCAACTCTA-CAAAACCT  276
            ||| |||||||||||||||||||||||||||||||| || |||||||| || |||||  |
Sbjct  3    GATGAAAAGTGATGGAAATTGCCAGTTCCGTGCTTTGGCGGATCAACTTTATCAAAAT-T  61

Query  277  CGGATTGTCATAAACGTGTTAGACAAGAAATCATACAACAGA  318
            ||||||||||| ||| |||||||||||||||| || ||||||
Sbjct  62   CGGATTGTCATGAACTTGTTAGACAAGAAATCGTAAAACAGA  103


> AT5G03330.1 | Symbols:  | Cysteine proteinases superfamily protein 
| chr5:806964-809779 FORWARD LENGTH=1537
Length=1537

 Score = 95.3 bits (51),  Expect = 4e-19
 Identities = 78/91 (86%), Gaps = 2/91 (2%)
 Strand=Plus/Plus

Query  228   GATGGAAATTGCCAGTTCCGTGCTTTAGCTGATCAACTCTACAAAACCTCGGATTGTCAT  287
             ||||| |||||||||||||||||||||||||||||||| ||||||||| | ||| | |||
Sbjct  956   GATGGTAATTGCCAGTTCCGTGCTTTAGCTGATCAACTGTACAAAACCGCAGATCGCCAT  1015

Query  288   AAACGTGTTAGACAAGAAATCA-TACAACAG  317
             |||| |||| ||| | |||| | || |||||
Sbjct  1016  AAACATGTTCGACGACAAAT-AGTAAAACAG  1045



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17845050895


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5