BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937014

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44100.1 | Symbols:  | MD-2-related lipid recognition domain...   778    0.0  


> AT3G44100.1 | Symbols:  | MD-2-related lipid recognition domain-containing 
protein | chr3:15866039-15867310 REVERSE LENGTH=619
Length=619

 Score =  778 bits (421),  Expect = 0.0
 Identities = 470/494 (95%), Gaps = 1/494 (0%)
 Strand=Plus/Plus

Query  4    TCTACAATCACTCATCAATGGCGATTTCTCAAGCTCAGCCTCTGCTTCTTCTCCTCTTAT  63
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22   TCT-CAATCACTCATCAATGGCGATTTCTCAAGCTCAGCCTCTGCTTCTTCTCCTCTTAT  80

Query  64   CACTCTTCTTCTTACCTGCTTTACACGCAACTTCTTTCTCCTACTGCGATAAGAGGCTCG  123
            || ||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||
Sbjct  81   CAGTCTTCTTCTTACCTGCTTTGCACGCCACTTCTTTCACCTACTGCGATAAGAGGCTCG  140

Query  124  ATCCCGTTAAGGTCACGGGTGTGAAGATCTCTCCTGACCCTGTTGTGAGTGGTGAAGCTG  183
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
Sbjct  141  ATCCCGTTAAGGTCACGGGTGTGAAGATCTCCCCTGACCCTGTTGTGAGTGGTGCAGCCG  200

Query  184  CAACATTTAAGATTTTGGGTTCTACTGGCGAAGACATCTCTGGAGGAAAAGTAGTGATCA  243
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  201  CAACATTTAAGATTTTTGGTTCTACTGGCGAAGACATCTCTGGAGGAAAAGTAGTGATCA  260

Query  244  GGGTTTCATACTTTGGGATTCCTGTTCATACCGAAACTCATGACCTCTGCGAGGAGACGG  303
            |||||| |||| ||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct  261  GGGTTTTATACGTTGGGATTCCTGTCCATACCGAAACTCATGACCTCTGCGATGAGACGG  320

Query  304  CCTGCCCGATTGCACCAGGCAGCTTTGTGCTTTCTCATTCCCAAACACTCCCCTCAATTA  363
            | || ||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct  321  CATGTCCGGTTGCACCTGGCAGCTTTGTGCTTTCTCATTCTCAAACACTCCCTTCAATTA  380

Query  364  CACCACCTGGCACTTACACGCTTAAGATGACAATCAACGACAAGAATGGCGGAAGACTAA  423
            |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  381  CACCACCTGGTACTTACACGCTAAAGATGACAATCAACGACAAGAATGGCGGAAGACTAA  440

Query  424  CGTGCATCAGCTTCAAATTCAAGATCACAATAGGTTCCGCGGTCTTTGCTAGTTAAGTTT  483
            |||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct  441  CGTGTATCAGCTTCAAATTCAAGATCACAGTAGGTTCTGCGGTCTTTGCTAGTTAAGTTT  500

Query  484  TATGGTGTAAATTG  497
            ||||||||||||||
Sbjct  501  TATGGTGTAAATTG  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23810985678


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5