BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937017
Length=1334
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41000.1 | Symbols: YSL4 | YELLOW STRIPE like 4 | chr5:16420... 558 4e-158
AT3G27020.1 | Symbols: YSL6 | YELLOW STRIPE like 6 | chr3:99613... 289 6e-77
> AT5G41000.1 | Symbols: YSL4 | YELLOW STRIPE like 4 | chr5:16420780-16423830
FORWARD LENGTH=2276
Length=2276
Score = 558 bits (302), Expect = 4e-158
Identities = 340/359 (95%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 952 GGATATAATGGTGGAGTCATTGCCGGTTTAGCAGCCTGTGGCATTATGATGTCAATCGTC 1011
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1505 GGAAATAATGGTGGAGTCATTGCCGGTTTAGCAGCATGTGGCATTATGATGTCAATCGTC 1564
Query 1012 TCAACTGTAGCGGATCTCATGCAGGATTTTAAAACAGGTTACCTCACACTATCATCTGCA 1071
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 TCAACTGCAGCGGATCTCATGCAGGATTTTAAAACAGGTTACCTCACACTATCATCTGCA 1624
Query 1072 AAATCCATGTTTGTAACTCAACTTTTGGGTACAGCAATGGGTTGCATAATCGCTCCTGTC 1131
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1625 AAATCCATGTTTGTAACTCAGCTTTTGGGTACAGCAATGGGTTGCATAATCGCTCCTCTC 1684
Query 1132 ACATTCTGGCTGTTTTGGACTGCTTTTGATATTGGAGATCCTGATGGTCTATACAAAGCA 1191
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 ACGTTCTGGCTGTTTTGGACTGCTTTTGATATTGGAGATCCTGATGGTCTATACAAAGCA 1744
Query 1192 CCTTACGCAGTTATCTACCGTGAAATGGCTATTCTCGAGATCGAAGGCTTTGCGAAACTT 1251
|||||||| || |||||||| |||||||||||||||| | ||||||||||||| |||||
Sbjct 1745 CCTTACGCGGTCATCTACCGCGAAATGGCTATTCTCGGGGTCGAAGGCTTTGCCAAACTG 1804
Query 1252 CCCAAGCACTGTTTGACGCTTTGTTGCAGATTCTTCATAGCTGCTCTGATTGTAAATCT 1310
||||| ||||||||| | |||||||| |||||||||| ||||||||||||||||||||
Sbjct 1805 CCCAAACACTGTTTGGCACTTTGTTGTGGATTCTTCATCGCTGCTCTGATTGTAAATCT 1863
Score = 383 bits (207), Expect = 3e-105
Identities = 221/228 (97%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 272 GCTTAGTTTGGAGTTGCTTCAAGTGGTTCTTCAGTGGTATTGGAGATGCATGTGGGTTTG 331
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 792 GCTTAGTTTGGAGTTGCTTCAAGTGGTTCTTTAGTGGTATTGGAGGTGCATGTGGGTTTG 851
Query 332 ATCACTTTCCCACACTTGGTTTGACGCTATTCAAGAACACGTTTTACTTTGATTTCAGTC 391
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 852 ATCACTTTCCCACACTTGGTTTGACTCTATTCAAGAACACGTTTTACTTTGATTTCAGTC 911
Query 392 CTACTTTTATTGGATGTGGTATGATATGTCCCCATTTGGTGAACTGTTCGGTCCTTCTCG 451
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 912 CTACTTTTATTGGATGTGGCATGATATGTCCCCATTTGGTGAACTGTTCGGTTCTTCTTG 971
Query 452 GTGCTATCATTTCTTGGGGTTTTCTCTGGCCATTTATATCACAGCATG 499
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 972 GTGCTATCATCTCTTGGGGTTTTCTCTGGCCATTTATATCACAGCATG 1019
Score = 331 bits (179), Expect = 9e-90
Identities = 248/278 (89%), Gaps = 18/278 (6%)
Strand=Plus/Plus
Query 1 TTTGGTTGGTATTTGATAGCTATGGATGATAGGACATATAAGCTCATTGGTTCTGATTAT 60
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 488 TTTGGTTCGTATTTGATAGCTATGGATGAAAGGACATATAAGCTCATTGGTTCTGATTAT 547
Query 61 CCTGGAAACAATCCTGAAGATGTTATATACCCTGGATTGTGGTGGATGACTGGGTTTTTA 120
||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 548 CCTGGAAACAATCCTGAAGATGTTATAAATCCTGGATTGTGGTGGATGACTGGCTTTTTA 607
Query 121 TTTGTAGTTAGCTTTCTCGGTCTCTTCAGTCTCGTTCCACTTCGCAAGGGTGTATCTGAG 180
|||||||||||||| |||||||||||| ||||||||||||||||||||| || || ||
Sbjct 608 TTTGTAGTTAGCTTCCTCGGTCTCTTCTGTCTCGTTCCACTTCGCAAGG-TG-AT--GA- 662
Query 181 GTGATGATTTTGGACTACAAGCTTAC--AT---A-TGCAACCGCTACAGCGATGTTGATT 234
| | || ||| ||||||||||| || | || |||||||||||| |||||||||
Sbjct 663 -T--T--TT--GGATTACAAGCTTACGTATCCCAGTGGAACCGCTACAGCAATGTTGATT 715
Query 235 AACAGTTTCCACTACAACACTGGAGCTGAGCTTGCAGG 272
|||||||||||| |||| ||||||||||||||||||||
Sbjct 716 AACAGTTTCCACAACAATACTGGAGCTGAGCTTGCAGG 753
Score = 255 bits (138), Expect = 6e-67
Identities = 153/160 (96%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 783 AGATAAAAGTAAGACCTCAGAATTAATGCGGGAGAAGAAGAAAAGAGATGA-CATATTTC 841
|||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct 1213 AGATAAAAGTAAGACCTCAGTATTAATGCGGGAGAAGAAGAAAAGAGAT-ATCATATTTC 1271
Query 842 TCAAGGACCGTATACCCCTCGAGTTTGCGGTTTCTGGTTATGTGGGTCTTGCAGCCATTT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1272 TCAAGGACCGTATACCCCTCGAGTTTGCGGTTTCTGGTTATGTGGGTCTTGCAGCTATTT 1331
Query 902 CAACTGCTATAATCCCATTGTTATTCCCACCATTGAAATG 941
|||| ||||||||||| ||| |||||||||||||||||||
Sbjct 1332 CAACCGCTATAATCCCGTTGATATTCCCACCATTGAAATG 1371
Score = 202 bits (109), Expect = 8e-51
Identities = 123/130 (95%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 502 TTTATCGCCATTGCTATCATCCTTGGTGACGGTCTCTACAACCTCATTAAGATCATTATT 561
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1085 TTTATCGCCATTTCTATCATCCTTGGTGACGGTCTCTACAACCTCATTAAGATCATTGTT 1144
Query 562 GTCACTGTGAAGGAAATCTGCAACAAAAGCTCCAAACAACACCACCTACTTGTGTTTACC 621
|||||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||
Sbjct 1145 GTCACTGTGAAGGAAATCTGCAACAAAAGCTCCAGACAACACAACCTACCTGTCTTTACC 1204
Query 622 GACAATTTAG 631
|||| |||||
Sbjct 1205 GACATTTTAG 1214
> AT3G27020.1 | Symbols: YSL6 | YELLOW STRIPE like 6 | chr3:9961319-9964597
REVERSE LENGTH=2471
Length=2471
Score = 289 bits (156), Expect = 6e-77
Identities = 204/228 (89%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 272 GCTTAGTTTGGAGTTGCTTCAAGTGGTTCTTCAGTGGTATTGGAGATGCATGTGGGTTTG 331
||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 807 GCTTAATTTGGAGTTGTTTCAAATGGTTCTTCAGTGGTATTGGAGATGCATGTGGATTTG 866
Query 332 ATCACTTTCCCACACTTGGTTTGACGCTATTCAAGAACACGTTTTACTTTGATTTCAGTC 391
|| |||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 867 ATAACTTCCCCACCCTTGGTTTGACGTTATTCAAGAACACGTTTTACTTTGACTTCAGTC 926
Query 392 CTACTTTTATTGGATGTGGTATGATATGTCCCCATTTGGTGAACTGTTCGGTCCTTCTCG 451
|||||| ||||||||| || | ||||| |||||| | |||||||| ||||| |||||||
Sbjct 927 CTACTTATATTGGATGCGGCCTTATATGCCCCCATATAGTGAACTGCTCGGTTCTTCTCG 986
Query 452 GTGCTATCATTTCTTGGGGTTTTCTCTGGCCATTTATATCACAGCATG 499
|||| |||||||||||||| |||| ||||||||| ||||||||||||
Sbjct 987 GTGCGATCATTTCTTGGGGGATTCTATGGCCATTTGTATCACAGCATG 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65662312860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5