BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937018
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09910.1 | Symbols: | Ras-related small GTP-binding family ... 206 2e-52
> AT5G09910.1 | Symbols: | Ras-related small GTP-binding family
protein | chr5:3093272-3095156 FORWARD LENGTH=1130
Length=1130
Score = 206 bits (111), Expect = 2e-52
Identities = 184/216 (85%), Gaps = 18/216 (8%)
Strand=Plus/Plus
Query 121 GCTCCTCCTTTCTTCTGGTGGGCCTGGTTTTCTTCCCATCACATACATCGTTATTGGAAA 180
||||| |||||||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct 421 GCTCC-CCTTTCTTCTGGTGGGCCTGGTGGTCTTCCCGTCCCATACATCGTTATTGGAAA 479
Query 181 CAAAGCTGATATTGCTGAGAA-GGACGGAACAAGTGGAAGTAGTGGCAATCTTGTTGATG 239
||||||||||||||||| || ||| ||||||| |||||| |||||||||||||||||||
Sbjct 480 CAAAGCTGATATTGCTGCCAAAGGA-GGAACAAATGGAAGCAGTGGCAATCTTGTTGATG 538
Query 240 --G---GT--T-G-----ACAAGCATGGTCTGCTTCCCCATAGTGATGGACTTCCTCTCT 286
| || | | | ||||| |||||||||||||||||||||| |||||||||||
Sbjct 539 CAGCTCGTCATTGGGTTGAGAAGCAGGGTCTGCTTCCCCATAGTGATGAACTTCCTCTCT 598
Query 287 --GAGAACTTCCCTTGCAATGGTGGTCTCATAATGG 320
|||| ||||||| |||||| ||||||||||||||
Sbjct 599 CTGAGAGCTTCCCTAGCAATGTTGGTCTCATAATGG 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19604422110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5