BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937021

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09780.1 | Symbols: CCR1, ATCRR1 | CRINKLY4 related 1 | chr3...   261    2e-69


> AT3G09780.1 | Symbols: CCR1, ATCRR1 | CRINKLY4 related 1 | chr3:3000759-3003179 
REVERSE LENGTH=2421
Length=2421

 Score =  261 bits (141),  Expect = 2e-69
 Identities = 155/162 (96%), Gaps = 0/162 (0%)
 Strand=Plus/Plus

Query  1    CAAGCTACAACATTCCGTCCATGGCGGCTCTTTCAGGTGGAGACGGGTTTCTCTGCGGCA  60
            ||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct  250  CAAGCTACAACATTCCGTCAATGGCGGTTCTTTCAGGCGGAGACGGGTTTCTCTGCGGCA  309

Query  61   TTTTGTCGAACACTTCTCAGGCGTTTTGTTTTAGTTCACTTGGGTCTTCTTCAGGTATGG  120
            ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct  310  TTTTGTCGAACACTTCTCAAGCATTCTGTTTTAGTTCACTTGGGTCTTCTTCAGGTATGG  369

Query  121  ATCTTGTCCCTCTCGCTTACAGGACTACTGCTTACTCTCAGA  162
            ||||||||||||| ||||||||||||||||||||||||||||
Sbjct  370  ATCTTGTCCCTCTAGCTTACAGGACTACTGCTTACTCTCAGA  411



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9450336812


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5