BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937022

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48640.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   388    2e-107


> AT3G48640.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant 
structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); 
BEST Arabidopsis thaliana protein match is: Protein 
of unknown function (DUF677) (TAIR:AT5G66670.2); Has 42 
Blast hits to 42 proteins in 3 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr3:18021650-18022324 
REVERSE LENGTH=675
Length=675

 Score =  388 bits (210),  Expect = 2e-107
 Identities = 336/396 (85%), Gaps = 11/396 (3%)
 Strand=Plus/Plus

Query  5    GAATTTAT-TCAACAATTTCATGCACACGGACGAGTTCGCGACACAGTATGAGTCTGTCT  63
            ||| |||| | || || |||||| |||||||||||||||||||||||||||||||||| |
Sbjct  276  GAAGTTATCTGAA-AAGTTCATGTACACGGACGAGTTCGCGACACAGTATGAGTCTGTTT  334

Query  64   ACAAGGATCATGTCATGCTTTTAGAAAAGATCCGTGAGCTAGAAGTAGTGCTCGAGAAGA  123
            ||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct  335  ACAGGGATCATGTCATGCTCTTAGGAAAGATCCGTGAGCTAGAAGTAGTGCTCGAGAAGA  394

Query  124  AGCATAAGCATGCAAAGACAAGTAGGAGAGTGGCGGTTGGTTTTCTCGCGGCTGTGTCTC  183
            || ||||||||||||||| ||  |||| | ||  | ||||||||  ||||| | | | | 
Sbjct  395  AGTATAAGCATGCAAAGAGAAAAAGGATAATGAAGTTTGGTTTTGGCGCGGTTATCTTTA  454

Query  184  TCCCT-GTTGTCGCCGTAGTGGTCGTAGCCGCA-TCAAATCCCGCGTTTGGAATGGCTGG  241
            ||||| ||| ||| ||||| |||||||| | || | ||||||||||||||||||||||||
Sbjct  455  TCCCTTGTT-TCGTCGTAGCGGTCGTAGGC-CAATTAAATCCCGCGTTTGGAATGGCTGG  512

Query  242  CCAGGCAGGGGAAAAGTCC-TTCGAGCAGATGAAGAAGATCTATGAATTGACGAAGAAAG  300
            ||||| |||||||| |  | || |||  |  ||||||| ||||| ||||||||| | |||
Sbjct  513  CCAGGGAGGGGAAAGGGGCGTT-GAGGTGGCGAAGAAGCTCTATAAATTGACGATGGAAG  571

Query  301  TAGAGAATTCTAAGGAGAC-AC-T-GTTAGGTTTGTCTCTGTTGATTGGAAACAGAACAG  357
             ||| ||||||| |||||| || | |||||||||||||| |||||||||||||| |||| 
Sbjct  572  AAGATAATTCTATGGAGACGACATTGTTAGGTTTGTCTCGGTTGATTGGAAACACAACAA  631

Query  358  AAGTCAACATTGAAGCGATGAAGACGATAAAGAGCC  393
            ||| |||||||||||||||| ||| |||||||||||
Sbjct  632  AAGGCAACATTGAAGCGATGGAGAAGATAAAGAGCC  667



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20257902847


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5