BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937028

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30970.1 | Symbols: ASP1 | aspartate aminotransferase 1 | ch...   244    3e-64


> AT2G30970.1 | Symbols: ASP1 | aspartate aminotransferase 1 | 
chr2:13178849-13181931 FORWARD LENGTH=1701
Length=1701

 Score =  244 bits (132),  Expect = 3e-64
 Identities = 144/150 (96%), Gaps = 0/150 (0%)
 Strand=Plus/Plus

Query  39    GAAGATGCAAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAACAGCTAGCTAGACCAATG  98
             |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1043  GAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAGCAGCTAGCTAGACCAATG  1102

Query  99    TACAGCAACCCACCTTTACATGGTGCTCAACTGGTCTCAACCATTCTTGAAGACCCAGAG  158
             ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1103  TACAGCAACCCACCTTTGCATGGTGCTCAGCTGGTCTCAACCATTCTTGAAGACCCAGAG  1162

Query  159   TTAAAGAGTCTGTGGCTAAAGGAAGTTAAG  188
             |||||||||||||||||||| |||||||||
Sbjct  1163  TTAAAGAGTCTGTGGCTAAAAGAAGTTAAG  1192


 Score =  148 bits (80),  Expect = 2e-35
 Identities = 93/99 (94%), Gaps = 2/99 (2%)
 Strand=Plus/Plus

Query  187   AGATTGGAATGTTCTGCTACAGTGGGCTAACACCAGAACAGGTAGACCGCTTAACAAGCG  246
             |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  1287  AGATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTAACAAGCG  1346

Query  247   AATATCACATCTATATATGACCCGCAATGGCCGTATCAG  285
             ||||||||||||||||  |||||| || |||||||||||
Sbjct  1347  AATATCACATCTATAT--GACCCGTAACGGCCGTATCAG  1383


 Score = 52.8 bits (28),  Expect = 2e-06
 Identities = 31/32 (97%), Gaps = 1/32 (3%)
 Strand=Plus/Minus

Query  8     CTTGGGTGACTTCATGTATAGCATTCGCAAGG  39
             ||| ||||||||||||||||||||||||||||
Sbjct  1447  CTT-GGTGACTTCATGTATAGCATTCGCAAGG  1417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13471756732


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5