BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937029
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44096.1 | Symbols: | transposable element gene | chr3:1585... 316 2e-85
AT3G42770.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 305 5e-82
AT3G44180.1 | Symbols: | syntaxin-related family protein | chr... 300 2e-80
AT3G44080.1 | Symbols: | F-box family protein | chr3:15835632-... 161 1e-38
> AT3G44096.1 | Symbols: | transposable element gene | chr3:15859368-15863166
REVERSE LENGTH=3799
Length=3799
Score = 316 bits (171), Expect = 2e-85
Identities = 245/281 (87%), Gaps = 4/281 (1%)
Strand=Plus/Plus
Query 953 TCTGGATCGTTACACATTTGGTCGAAGACATCGGTTTGTAAGGATTCAAATTCCCTTGAA 1012
|||| |||||||||| ||||| |||||||||||||||||| |||||||||||||| ||
Sbjct 1429 TCTGCATCGTTACACTTTTGGACGAAGACATCGGTTTGTAGGGATTCAAATTCCCCCAAA 1488
Query 1013 TAACCAAATAAAGATGCTT-AGTATCATGCAATATCATGGAAGTGCAACCATGCTGAAAC 1071
|||||||||||||||| || |||||||||| || || |||||||||||| || ||||||
Sbjct 1489 TAACCAAATAAAGATG-TTGCGTATCATGCAGTACCAAGGAAGTGCAACCGTGTTGAAAC 1547
Query 1072 TCATTAGCCATTTCTTACTGAATATGGAGTGTCTTGAAGTTGTGAAAGTCTACGTTGCAC 1131
|||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 1548 ACATTAGCCATTTCTTAATGAATATGGAGTGTCTTGAAGTTGTGAAAGTTTATGTTGCAC 1607
Query 1132 GTACAATGGATGACCCCAGAAAGATGCAACTCACAGAGGATATTTTGAAGCTTCCAACAG 1191
|||||||||||||| || ||||||||| |||||||||||| | ||||||||||| |||
Sbjct 1608 CTACAATGGATGACCTCAAAAAGATGCAGCTCACAGAGGATCTGTTGAAGCTTCCCGCAG 1667
Query 1192 CTTCATCTAGGG-TCAAGATACAAGTTATGTGATCACCATC 1231
|||||| ||| | ||||| ||||| |||||||| ||||
Sbjct 1668 CTTCAT-TAGAACTGAAGATCCAAGTCGTGTGATCATCATC 1707
Score = 204 bits (110), Expect = 2e-51
Identities = 346/455 (76%), Gaps = 36/455 (8%)
Strand=Plus/Plus
Query 429 TTCCCATCCAAAGTCTTCACCAGCACAACACTGGTTAAGCTGTCACTGGGAGTGGGAACA 488
||||||||| |||| |||||||||||||||||||||||||||||| |||| | |||
Sbjct 256 TTCCCATCCCAAGTATTCACCAGCACAACACTGGTTAAGCTGTCATTGGG-GAA--AACC 312
Query 489 -AGATTTTACACCGAA-AGTGTTCCTTCAGATTTATCTCTTCCAGCACTAAAGGTTCTCT 546
| | ||| | | ||| ||| | | ||| |||||| |||| |||||||||||||
Sbjct 313 CA-AC---ACATCTATGAGTTTTC-TCCTGATACATCTCTCCCAGTACTAAAGGTTCTCC 367
Query 547 TCCTTGATTCAATTATTTGGTTTAAGGGTGATCTACAATTATTAAATGTGTTTCTCGCTG 606
|||||||||| | || |||||| || || | || ||| |||||| ||| ||||||
Sbjct 368 TCCTTGATTC--T-ATCTGGTTTT-GGAA-ATATCCA-TTAGCAAATGTATTTTTCGCTG 421
Query 607 CTTGCCCTGCACTCGAGGACTTAACCATACATTATA-TG-TGTG-GATCTGAAAACCCTC 663
||||||||||||| |||||||||||||||| ||| | | | | || ||| | |
Sbjct 422 CTTGCCCTGCACTTGAGGACTTAACCATACGTTACAATAATTTTAGAG--GAAGTTCAT- 478
Query 664 ACGTCATATCCAGCAAAACCATTAAGAAACTCTC-GTTTACCTATGGTTA-TATCTATGA 721
|||| ||||||||||||| ||||||||||||||| ||| | | || | | || | ||
Sbjct 479 ACGTTATATCCAGCAAAAGCATTAAGAAACTCTCAGTT-ATCAATAGC-AGTAG-T-TG- 533
Query 722 TTATTATGGTTATTTTTCTAGAATTATTTCATTTGACACACCGAATGTTGTCGACTTCTA 781
|||| ||||| || | || ||||| || |||| ||||| |||||||||||||||||
Sbjct 534 TTATGATGGTCATCAT---AGCGTTATTACACTTGATACACCCAATGTTGTCGACTTCTA 590
Query 782 CTACTCAGATTATT-TTGGGAGTGAATCTCCGCAACGTCACTTT-GATTCAATTGCCAAA 839
|||||| | || || || | | || ||| || || | ||| |||||| ||||||||
Sbjct 591 CTACTCTGGTT-TTCTTCAGCCTAAAGATCCACATTGTAA-TTTAGATTCACTTGCCAAA 648
Query 840 GCTACATTGGACCTTCATTTCTTAAAAGGTGACAA 874
|||||| ||||||||||||||||| ||| ||||||
Sbjct 649 GCTACACTGGACCTTCATTTCTTAGAAGATGACAA 683
> AT3G42770.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr3:14867122-14870083 FORWARD LENGTH=1599
Length=1599
Score = 305 bits (165), Expect = 5e-82
Identities = 703/944 (74%), Gaps = 111/944 (12%)
Strand=Plus/Plus
Query 45 ATGAATTGTCTTCCAGATGATCTTCTTGTCCAAATCTTGTCCTTTCTTACTACGAAAGAA 104
|||||||||||||||||||| |||||||| |||||||| ||||| ||| | || ||||||
Sbjct 1 ATGAATTGTCTTCCAGATGAGCTTCTTGTTCAAATCTTATCCTTCCTTCCCACTAAAGAA 60
Query 105 GCTGCTTCGACCTTTGTTTTGTCCAAGAGATGGAGGACTCTGTTTGCTCTCCGTCATAAT 164
||| |||| |||| | || | |||||||| ||||||||||| ||| ||||| ||| ||||
Sbjct 61 GCTACTTCAACCTCTCTTCTCTCCAAGAGGTGGAGGACTCTATTTACTCTCAGTCCTAAT 120
Query 165 CTTGACTTTGACAACAT-GAACCTTTTGGACACT-GAAGATTTGCTTAAACATAGTA-GA 221
||||||||||||||| | |||||| | || | || | || |||| | || |
Sbjct 121 CTTGACTTTGACAAC-TCCCTCCTTTT-G-CAATCCAA-A-AAGCGTAAATGGAATATG- 174
Query 222 CGCCACATTAAAAAGAGTTTCAATGATTTTGTGGATCA-TACATTGGCTTTGCATGGCAA 280
||| | ||| ||||||||||| || ||| |||||| | |||||||||||| || |||
Sbjct 175 CGCAATATTCAAAAGAGTTTCGTTGGTTTCGTGGAT-AGTACATTGGCTTTACAAGGCGG 233
Query 281 TAACACTATAAAGA-AGTTCTCACTT-GAACTTAGTGATACTCAT--A-TTGAT-AAT-C 333
||| |||||| | ||||||| || || ||| || || | | | || | |||
Sbjct 234 TAAGGGTATAAA-ATCGTTCTCA-TTAAAATTTAAAGAAACACTTGGAGATG-TAAATGG 290
Query 334 T--ACATGACGTTGACCGCTGGATATGTAATGCCCTGGAACGCGGTGTCTCTGACCTTCA 391
| | ||| ||| |||| ||||||||||||||||| |||| |||||||||||| |||||
Sbjct 291 TGAAGTTGATGTTAACCGATGGATATGTAATGCCCTTGAACACGGTGTCTCTGAGCTTCA 350
Query 392 T-TTAGGCATAGAATCTGAATTATTTTTGTGGTCTGGAT-TCCCATCC-AAAGTCTTCAC 448
| | ||| |||| | || | || | ||| | || |||||||| ||| |||||||
Sbjct 351 TCTAAGG-ATAG-A-CT--A-TA-CGAAGCGGTGT-CATCTCCCATCCGAAA-TCTTCAC 401
Query 449 CAGCAC-AACACTGGTTAAGCTGTCACTGGGAGTGGGAACA-AGATTTTAC-ACCGAAAG 505
|||||| || | |||||||||||||| | ||| |||| | | || | || ||
Sbjct 402 CAGCACGAA-ATTGGTTAAGCTGTCA-T-----TGGTAACACA-AAGTTGCTTCC--CAG 451
Query 506 -TGTTCCTTCAGA-T-T-TATCTCTTCCAGCACTAAAGGTTCTCTTCCTTGATTCAATTA 561
||| || | | | | | ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 452 TTGTACC-T-A-ATTGTATATCTCTCCCATCACTAAAGGTTCTCTTCCTTGATTCAATT- 507
Query 562 TTTGGTTT-AAGGGTGATC-TACAATTATTAAATGTGTTTCTCGCTGCTTGCCCTGCACT 619
| ||||| ||| | || | ||||| |||| | | || ||| ||||||||||||||||
Sbjct 508 T--GGTTTGAAG--T--TCCT-CAATTCTTAA-TAT-TT-CTCACTGCTTGCCCTGCACT 557
Query 620 CGAGGACTTAACCATACATTATATGTGTGGAT-CTGAA--AAC-CC-TCACG-TCATATC 673
|| |||||||||||| || | | | | || ||| | || || | || | |||||
Sbjct 558 TGAAGACTTAACCATATATCAAAAGCCTC-ATTCTGTAGGAATGCCAT-ACCAT-ATATC 614
Query 674 CAGCAAAACCATTAAGAAACTCTC-GTTTACCTATGGTTATATCTATGATTATTATGGTT 732
|||||||||||||||| |||||| ||| |||||| | || | | ||||| || ||
Sbjct 615 TAGCAAAACCATTAAGAGACTCTCTGTT-ACCTAT----ACATGTG-G-TTATTTTG-TT 666
Query 733 -ATTTTT-C-T-AGAATTATTTCATTTGACACACCGAATGTTGTCGACTTCTACTACTCA 788
||| | | | | |||||||| | ||||||||| |||||||||| ||||||||||
Sbjct 667 GATTATGGCCTTA-AATTATTT-A----ACACACCGAGTGTTGTCGACCTCTACTACTCT 720
Query 789 GATTATTTTGGG-AGTGAA-TCTCCGCA-ACGTCACTTTG-ATTCAATTGCC-AAAGCTA 843
|||||| || | | | || | ||| || | | | |||| ||||| || || |||||||
Sbjct 721 GATTATGTTCGACA-T-AAGTATCCACATATGA-A-TTTGGATTCACTT-CCTAAAGCTA 775
Query 844 CATTGGACCTTCATTTCTTAAAAGGTGACAA-GATTGCGGATGTGACAGATCTCATCAGT 902
|| ||||| ||||||||||| | ||| || | || | |||||||| ||| |||||
Sbjct 776 CACTGGACATTCATTTCTTAGA---TGATAATGCC-GCTAACGTGACAGAGCTCCTCAGT 831
Query 903 GGGATACGCAATGTTAAGACCCTCCACTTGAATTCTTCTACTGT 946
||||||||||| || |||||||| ||||||| |||||| |||||
Sbjct 832 GGGATACGCAACGTCAAGACCCTTCACTTGACTTCTTCCACTGT 875
> AT3G44180.1 | Symbols: | syntaxin-related family protein | chr3:15900795-15901716
FORWARD LENGTH=609
Length=609
Score = 300 bits (162), Expect = 2e-80
Identities = 250/291 (86%), Gaps = 11/291 (4%)
Strand=Plus/Plus
Query 664 ACGTCATATCCAGCAAAACCATTAAGAAACTCTCGTTTACCTATGGTTAT-ATCTAT-GA 721
|||||||||||| |||||||||||||||||||||| ||||| | ||| | | || | |
Sbjct 59 ACGTCATATCCAACAAAACCATTAAGAAACTCTCGGTTACC--T-GTT-TGAACTGTCG- 113
Query 722 TTATTATGGTTA-TTTTTCTAGAATTATTTCATTTGACACACCGAATGTTGTCGACTTCT 780
||||||||| || | || |||||| ||||||||||||||||||||||||||| || |||
Sbjct 114 TTATTATGG-TACTGTTCCTAGAAATATTTCATTTGACACACCGAATGTTGTTGATTTCA 172
Query 781 ACTACTCAGATTATTTTGGGAGTGAATCTCCGCAACGTCACTTTGATTCAATTGCCAAAG 840
||||||| |||||| || | |||||||||| ||| ||||||| |||||| |||||||||
Sbjct 173 ACTACTCTGATTATCTTCGTCGTGAATCTCCACAATGTCACTTGGATTCACTTGCCAAAG 232
Query 841 CTACATTGGACCTTCATTTCTTAAAAGGTGACAAGATTGCGGATGTGACAGATCTCATCA 900
|||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||
Sbjct 233 CTACATTGGACCTTCATTTCTTCGAAGATGACAAGAGAGCAGATGTGACAGATCTCATCA 292
Query 901 GTGGGATACGCAATGTTAAGACCCTCCACTTGAA-TTCTTCTACTGTCGAG 950
||||| ||| ||||| |||||||| ||||| || ||||||||||||||||
Sbjct 293 GTGGGCTACATAATGTCAAGACCCTTCACTT-AACTTCTTCTACTGTCGAG 342
> AT3G44080.1 | Symbols: | F-box family protein | chr3:15835632-15837126
REVERSE LENGTH=1164
Length=1164
Score = 161 bits (87), Expect = 1e-38
Identities = 406/551 (74%), Gaps = 57/551 (10%)
Strand=Plus/Plus
Query 41 TTCAATGAATTGTCTTCCAGATGATCTTCTTGTCCAAATCTTGTCCTTTCTTACTACGAA 100
||||||| |||||||||| ||||| ||||||||| ||||||| |||| ||||| |||||
Sbjct 21 TTCAATGGATTGTCTTCCTGATGAACTTCTTGTCGAAATCTTATCCTCCCTTACCACGAA 80
Query 101 AGAAGCTGCTTCGACCTTTGTTTTGTCCAAGAGATGGAGGACTCTGT-TTGCTCTCCGT- 158
| |||| | ||| |||| | || | || ||||| |||| |||||| | || |||| |||
Sbjct 81 ACAAGCAGTTTCAACCTCTCTTCTCTCAAAGAGGTGGAAGACTCTATATT-CTCT-CGTG 138
Query 159 CATAATCTTGACTTTGACAACATGA-A-CCTTTTGGACAC-TGAAGATTTGCTTAAACAT 215
|||||||||||| ||||| || | | | |||||| || | ||||| | || | |||
Sbjct 139 CATAATCTTGACATTGACGAC-T-ACATCCTTTTCCAC-CGGGAAGA--CGGTT-ATCAT 192
Query 216 -AGTAGACGCC--ACATTAAAAAGAGTTTCAATGATTTTGTGGATCA-TACATTGGCTTT 271
||| | ||| ||||| ||||||||||| | ||||| || || | |||||||||||
Sbjct 193 CGGTATAGGCCTGACATTCAAAAGAGTTTCGAGGATTTCGTAGA-GAGGACATTGGCTTT 251
Query 272 GCATGGCAATAACACTATAAAGAAGTTCTCACTTGAACTTAGTG-A-TA-CT-CATATT- 326
| |||| || |||||||| ||||||||| || ||| | | || | ||| ||
Sbjct 252 CCGTGGC-----CA-TATAAAGACGTTCTCACTAAAAAGTAGAGAATTATATGCAT-TTG 304
Query 327 GA-TAATC-TACATGACGTTGACCGCTGGATATGTAATGCCCTGGAACGCGGTGTCTCTG 384
|| | | | ||| ||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 305 GACTTGGCGTGGATGTTGTTAACCGCTGGATTTGTAATGCCCTGGAACGCGGTGTCTCTG 364
Query 385 ACCTTCATTTAGGCATAGAAT-CTGAATTATTTTTGTGGTCTGGATTCCCATCCAAAGTC 443
| || ||| || ||||| ||| | | | || | || ||| || | |||| ||
Sbjct 365 AGCTACATCTATGCATA-AATTC-GCA--------GT--T-TGAATTACCTTACAAATTC 411
Query 444 TTCACCAGCACAACACTGGTTAAGCTGTCACTGGGA-GTGGGAACAAGATTTTACACCGA 502
||||| ||||| |||||||||| ||||||| ||||| | || | | || | | | | |
Sbjct 412 TTCACTAGCACCACACTGGTTATGCTGTCATTGGGAAGAGG-A-CTAG-TGTG-CTCAAA 467
Query 503 AAGTGTTCCTTCAGATTTATCTCTTCCAGCACTAAAGGTTCTCTTCCTTGATTCAATTAT 562
|| | | ||| | || |||||| |||| ||| ||| ||||||||||| ||||||| |
Sbjct 468 AA-T-T-CCTCCGGAGACATCTCTCCCAGTACTTAAGATTCTCTTCCTTTATTCAATC-T 523
Query 563 TTGGTTTAAGG 573
|||||||||
Sbjct 524 --GGTTTAAGG 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61094063265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5