BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937036
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44220.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1026 0.0
> AT3G44220.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr3:15928160-15929758
FORWARD LENGTH=790
Length=790
Score = 1026 bits (555), Expect = 0.0
Identities = 627/663 (95%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 1 CGCTAAAAGCAACCGCGAAAATGACGGAGAAGGAATGTGAGCATCACCACGACGAAGATG 60
||||||| ||||| || || ||||| |||||||||||||| |||||||||||||||||||
Sbjct 37 CGCTAAACGCAACAGCCAAGATGACTGAGAAGGAATGTGAACATCACCACGACGAAGATG 96
Query 61 AGAAGATGCGGAAACGCATAGGAGCGGTGGTTCTTGGGTTTCTTGCAGTTGTTCTTTTTG 120
|||||||| ||||||| |||||||| |||| ||||||||||| |||| ||||||||| |
Sbjct 97 AGAAGATGAGGAAACGTATAGGAGCATTGGTGCTTGGGTTTCTCGCAGCTGTTCTTTTCG 156
Query 121 TGGTTTTCTTGGTGTGGGCGATACTTCACCCACACGGACCGCGTTTTGTTCTTCAAGACG 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 157 TGGTTTTCTTGGTGTGGGCGATACTTCACCCACACGGACCACGTTTTGTTCTTCAAGACG 216
Query 181 CAACCATTTACGCATTCAACGTTTCTCAGCCCAATTATCTCACTTCTAATCTTCAGGTCA 240
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 217 CAACCATTTACGCGTTCAACGTTTCTCAGCCTAATTATCTCACTTCTAATCTTCAGGTCA 276
Query 241 CTCTTTCTTCTCGAAATCCTAATGACAAGATCGGAATTTTCTATGACCGCCTTGACATTT 300
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 277 CTCTTTCTTCACGAAATCCTAATGACAAGATCGGAATCTTCTATGACCGCCTTGACATCT 336
Query 301 ACGCTTCTTACCGTAACCAACAGGTGACGTTGGCGACTTTATTGCCGGCGACTTACCAAG 360
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 337 ACGCATCTTACCGCAACCAACAGGTGACGTTGGCGACGTTATTGCCGGCGACTTACCAAG 396
Query 361 GCCACCTTGATGTGACCGTATGGTCGCCATTTCTGTATGGAACAACCGTACCGGTGGCAC 420
|||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 397 GCCACCTTGATGTGACAATATGGTCGCCGTTTCTGTATGGAACAACTGTACCGGTGGCAC 456
Query 421 CATATTTTTCTCCGGTGTTAAGCCAAGATCTAACGGCGGGGATGGTGCTTCTGAATATTA 480
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 457 CATATTTTTCTCCGGCGTTAAGCCAAGATCTAACGGCGGGGATGGTGCTTCTGAATATCA 516
Query 481 AGATCGATGGTTGGGTTAGATGGAAAGTAGGAACGTGGGTCTCCGGTAGGTATCGCCTCC 540
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 517 AGATCGATGGTTGGGTTAGATGGAAAGTGGGAACGTGGGTCTCCGGTAGGTACCGCCTCC 576
Query 541 ACGTCAATTGTCCAGCTTACATTACCTTAGCCGGACATTTTTCCGGTGACGGTCCAGCCG 600
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 577 ACGTCAATTGTCCAGCTTACATTACCTTAGCCGGACATTTTTCTGGTGATGGTCCAGCCG 636
Query 601 TAAAGTACCAGCTTGTTCAACGATGTGCCGTTGACGTTTAAACAAAGGGATCATCATTAT 660
| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 637 TGAAGTACCAGCTTGTCCAACGATGTGCCGTTGATGTTTAAACAAAGGGATCATCATTAT 696
Query 661 TCT 663
|||
Sbjct 697 TCT 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5