BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937037

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47490.1 | Symbols:  | RGPR-related | chr5:19264675-19270800...   115    2e-25


> AT5G47490.1 | Symbols:  | RGPR-related | chr5:19264675-19270800 
FORWARD LENGTH=4399
Length=4399

 Score =  115 bits (62),  Expect = 2e-25
 Identities = 79/87 (91%), Gaps = 1/87 (1%)
 Strand=Plus/Plus

Query  91    AATGCCTCAAGACAAGCCGATCACCTG-AGCAGAATTGTGAAAACTGTTTGTTTCATCTC  149
             |||||||||||||| |||||||||| | ||  ||| |||| |||| ||||||||||||||
Sbjct  2783  AATGCCTCAAGACAGGCCGATCACCAGAAGTGGAAATGTGGAAACAGTTTGTTTCATCTC  2842

Query  150   TTGAAGAGAGAATCCGTATCCACCAAC  176
             |||||||||||||||||||||||||||
Sbjct  2843  TTGAAGAGAGAATCCGTATCCACCAAC  2869



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11360511274


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5