BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937038

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44230.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   787    0.0  


> AT3G44230.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G22160.1); 
Has 21 Blast hits to 21 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15932134-15932748 
FORWARD LENGTH=615
Length=615

 Score =  787 bits (426),  Expect = 0.0
 Identities = 552/614 (90%), Gaps = 4/614 (1%)
 Strand=Plus/Plus

Query  21   ATGGATTACGAAACACTAGAGATCGAAGACCCAAATGATCTTAACATTCCCGTTGATGAT  80
            ||||||||| ||||| ||||||| ||||||||||||||| |||||||||||| || ||| 
Sbjct  1    ATGGATTACCAAACATTAGAGATTGAAGACCCAAATGATGTTAACATTCCCGATGCTGAG  60

Query  81   AACTACTTAGTGGAGCCAGGTTGGGCTGCATTCTTCTCCCTCCTAGCCGTGTACGCCATC  140
            |||| ||| ||||| ||||||||||||||  | ||| ||||||||||||||||||| |||
Sbjct  61   AACTGCTTTGTGGAACCAGGTTGGGCTGCCCTGTTCACCCTCCTAGCCGTGTACGCTATC  120

Query  141  TTATTTTCCATCGACAATTTAGCTTT-TTGTCAGGCCAACTTCTTAATCCAATCTATATC  199
            |||||||||||||||||||| | ||| |||| |||||||||||| |||||||||||||||
Sbjct  121  TTATTTTCCATCGACAATTT-GTTTTCTTGTAAGGCCAACTTCTCAATCCAATCTATATC  179

Query  200  CGTCTCCTCCTCCTCTGCTGAATCGGTGTGGATTGTATATTTCTTTGTGAAGAAACCTAG  259
            ||||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||||||
Sbjct  180  CGTCTCCGCCTCCTCTTCTGAATCGGTGTGGATCGTATATTTCATTGTGAAGAAACCTAG  239

Query  260  CTTTAGGTGTTCTATCTCTTATGAACGCGAATATGTGTCGGCCAATCTTGGTCCCCTGAA  319
            ||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||
Sbjct  240  CTTTATGTGTTCTATCTCTTATGAACGCGAATACGTGTCAGCCAATCTTAGTCCCCTAAA  299

Query  320  AAGTGCCATTTTAAATGTATCTCACAACCAACGTTCCAATGGTC-ACACAGAtttttttG  378
            |||||||||| |||| || |||||| |||||||||||||||| |  ||| |||||||  |
Sbjct  300  AAGTGCCATTGTAAACGTCTCTCACTACCAACGTTCCAATGG-CTTCACGGATTTTTCCG  358

Query  379  TCGCTTTCGAGGCTGAGACTGAGGATATTGGACCCGCCAATGGAGGCGACGTTTTTTCAG  438
            | | ||||| |||||||||||||||||||||||| ||||||||| || ||||| ||||||
Sbjct  359  TGGTTTTCGCGGCTGAGACTGAGGATATTGGACCAGCCAATGGAAGCAACGTTATTTCAG  418

Query  439  GTGTCCACAATCTTAATATTACACTCCTCATGAAGCACAAACAATTTGCAGCGAACAACA  498
            ||||| ||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||
Sbjct  419  GTGTCTACAATCTTAATATTACACTTCTCATGAAGCATAAACAAATTGCCGCGAACAACA  478

Query  499  AACCAGGACATTTGATTGTTCAGTGTAGAAATCTTACCGTTGTGTTCTCATCGGATATGA  558
            ||||||||||||| | |||||||||||||||| ||||| | |||||||||||||||||||
Sbjct  479  AACCAGGACATTTCAATGTTCAGTGTAGAAATTTTACCCTAGTGTTCTCATCGGATATGA  538

Query  559  AGTCGGGAACAATGCTCGGTGAAAAGAAGATTGAATGTCACTCATCTTTTCTAAATTTGA  618
            ||||||||   ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct  539  AGTCGGGAGTGATGCTCGGTGACAAGAAAATTGAATGTCACTCATCTTTTCTAAATTTGA  598

Query  619  AAGAGCTTTTTCCT  632
            |||||| |||||||
Sbjct  599  AAGAGCCTTTTCCT  612



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32099619933


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5