BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937038 Length=664 Score E Sequences producing significant alignments: (Bits) Value AT3G44230.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 787 0.0 > AT3G44230.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22160.1); Has 21 Blast hits to 21 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15932134-15932748 FORWARD LENGTH=615 Length=615 Score = 787 bits (426), Expect = 0.0 Identities = 552/614 (90%), Gaps = 4/614 (1%) Strand=Plus/Plus Query 21 ATGGATTACGAAACACTAGAGATCGAAGACCCAAATGATCTTAACATTCCCGTTGATGAT 80 ||||||||| ||||| ||||||| ||||||||||||||| |||||||||||| || ||| Sbjct 1 ATGGATTACCAAACATTAGAGATTGAAGACCCAAATGATGTTAACATTCCCGATGCTGAG 60 Query 81 AACTACTTAGTGGAGCCAGGTTGGGCTGCATTCTTCTCCCTCCTAGCCGTGTACGCCATC 140 |||| ||| ||||| |||||||||||||| | ||| ||||||||||||||||||| ||| Sbjct 61 AACTGCTTTGTGGAACCAGGTTGGGCTGCCCTGTTCACCCTCCTAGCCGTGTACGCTATC 120 Query 141 TTATTTTCCATCGACAATTTAGCTTT-TTGTCAGGCCAACTTCTTAATCCAATCTATATC 199 |||||||||||||||||||| | ||| |||| |||||||||||| ||||||||||||||| Sbjct 121 TTATTTTCCATCGACAATTT-GTTTTCTTGTAAGGCCAACTTCTCAATCCAATCTATATC 179 Query 200 CGTCTCCTCCTCCTCTGCTGAATCGGTGTGGATTGTATATTTCTTTGTGAAGAAACCTAG 259 ||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||| Sbjct 180 CGTCTCCGCCTCCTCTTCTGAATCGGTGTGGATCGTATATTTCATTGTGAAGAAACCTAG 239 Query 260 CTTTAGGTGTTCTATCTCTTATGAACGCGAATATGTGTCGGCCAATCTTGGTCCCCTGAA 319 ||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||||||| || Sbjct 240 CTTTATGTGTTCTATCTCTTATGAACGCGAATACGTGTCAGCCAATCTTAGTCCCCTAAA 299 Query 320 AAGTGCCATTTTAAATGTATCTCACAACCAACGTTCCAATGGTC-ACACAGAtttttttG 378 |||||||||| |||| || |||||| |||||||||||||||| | ||| ||||||| | Sbjct 300 AAGTGCCATTGTAAACGTCTCTCACTACCAACGTTCCAATGG-CTTCACGGATTTTTCCG 358 Query 379 TCGCTTTCGAGGCTGAGACTGAGGATATTGGACCCGCCAATGGAGGCGACGTTTTTTCAG 438 | | ||||| |||||||||||||||||||||||| ||||||||| || ||||| |||||| Sbjct 359 TGGTTTTCGCGGCTGAGACTGAGGATATTGGACCAGCCAATGGAAGCAACGTTATTTCAG 418 Query 439 GTGTCCACAATCTTAATATTACACTCCTCATGAAGCACAAACAATTTGCAGCGAACAACA 498 ||||| ||||||||||||||||||| ||||||||||| |||||| |||| |||||||||| Sbjct 419 GTGTCTACAATCTTAATATTACACTTCTCATGAAGCATAAACAAATTGCCGCGAACAACA 478 Query 499 AACCAGGACATTTGATTGTTCAGTGTAGAAATCTTACCGTTGTGTTCTCATCGGATATGA 558 ||||||||||||| | |||||||||||||||| ||||| | ||||||||||||||||||| Sbjct 479 AACCAGGACATTTCAATGTTCAGTGTAGAAATTTTACCCTAGTGTTCTCATCGGATATGA 538 Query 559 AGTCGGGAACAATGCTCGGTGAAAAGAAGATTGAATGTCACTCATCTTTTCTAAATTTGA 618 |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 539 AGTCGGGAGTGATGCTCGGTGACAAGAAAATTGAATGTCACTCATCTTTTCTAAATTTGA 598 Query 619 AAGAGCTTTTTCCT 632 |||||| ||||||| Sbjct 599 AAGAGCCTTTTCCT 612 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32099619933 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5