BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937041

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40430.2 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   272    2e-72


> AT2G40430.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 
P60-like (InterPro:IPR011687), Tumour suppressor protein 
Gltscr2 (InterPro:IPR011211); Has 706 Blast hits to 639 
proteins in 197 species: Archae - 0; Bacteria - 32; Metazoa 
- 228; Fungi - 147; Plants - 47; Viruses - 0; Other Eukaryotes 
- 252 (source: NCBI BLink). | chr2:16879216-16882427 REVERSE 
LENGTH=1723
Length=1723

 Score =  272 bits (147),  Expect = 2e-72
 Identities = 209/238 (88%), Gaps = 8/238 (3%)
 Strand=Plus/Plus

Query  75   CTTCAAAGCCAAAGTTAAAGAAGAA-TGAGAAGGCAATCGGTTA-CGAAGAGAAAGCATG  132
            |||||||||||||||| ||||| || | ||||| ||||| ||||  ||||| ||||||  
Sbjct  328  CTTCAAAGCCAAAGTTGAAGAA-AAGTAAGAAGACAATC-GTTATAGAAGACAAAGCACC  385

Query  133  TAAACAAGTTCATAAAAA-TGTTGGTGACGACTCTGTAATAGTGGACTTATGGGCTGATG  191
            |||||||||||| ||||| |||||||||||| |||||||| |  ||||| |||| |||||
Sbjct  386  TAAACAAGTTCA-AAAAAGTGTTGGTGACGATTCTGTAATGGCCGACTTGTGGGGTGATG  444

Query  192  ATAGTAAAGGAGAAGATGAGAGCAATCCTAGAAAGATTTTCAAAAAGCCATCGATTATTC  251
            |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| 
Sbjct  445  ATAGTAAAGGAGAACATGAGAGCAATCCTAGAAAGATTTTCAAAAATCCTTCGATTATTT  504

Query  252  CAGCAGTGGAAATTGAACATCGAGGATGGTCATACAACCCTACAAGTG-GAAGTCACC  308
            ||||||| ||||||||||||| |||||| |||||||||||||||| || || ||||||
Sbjct  505  CAGCAGTAGAAATTGAACATCCAGGATGCTCATACAACCCTACAACTGAGA-GTCACC  561



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5