BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937043

Length=908
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44240.1 | Symbols:  | Polynucleotidyl transferase, ribonucl...   490    1e-137


> AT3G44240.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease 
H-like superfamily protein | chr3:15940184-15940903 FORWARD 
LENGTH=720
Length=720

 Score =  490 bits (265),  Expect = 1e-137
 Identities = 389/448 (87%), Gaps = 11/448 (2%)
 Strand=Plus/Plus

Query  208  TGGGAAATCAATTTCTCAGATTTCGGAGTTGATGATGCTAGAAACGAGAAATCTATCGAG  267
            ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || |||
Sbjct  199  TGGGAGATCAATTTCTCTGATTTCGGAGTTGACGATGCTAGAAACGAGAAATCCATTGAG  258

Query  268  TTCCTTAGACGCAACGGTCTAGATCTGAGGAAGATTAGAGAAGAAGGAATCGGAATCAAG  327
            |||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||| ||
Sbjct  259  TTCCTTAGACGCAACGGTCTAGATCTAAGGAAGATTAGAGAAGAGGGCATCAGAATCGAG  318

Query  328  GGTTTTTTCTCGGAGCTGTTTTGGATTCTGAAGAAG--G-CGAGGAATATCACCTGGGTC  384
            ||||| ||||||||| |||||||||| |||||||||  |  ||||||||| || ||||||
Sbjct  319  GGTTTCTTCTCGGAGATGTTTTGGATGCTGAAGAAGACGAGGAGGAATATTACTTGGGTC  378

Query  385  ACATTTCATGGATATTACGATATCGCTTATTTACTCAAGTGTTTCACCGGAGAAGCTTTA  444
            || |||||||||| |||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct  379  ACGTTTCATGGATCTTACGACATCGCCTATTTACTCAAGGGTTTCACCGGAGAAGCTTTA  438

Query  445  CCGTAT-ACTCCTA-AGAGGTTTTCGAAAGCGGTGGCCAGAATTCTCGGTTCTGTTTATG  502
            || | | ||| | | |||||||||| |||||||| || ||| |||||||||||||||| |
Sbjct  439  CC-TGTGACTTC-AGAGAGGTTTTCTAAAGCGGTCGCGAGAGTTCTCGGTTCTGTTTACG  496

Query  503  ATCTGAATGTCATGGCTGGTCAACACCAAGGACTAAGTAGCAGACTTGGTTTGGAGAGTC  562
            || |||| |||||||| |||| |    |||||||||||||||| ||||||||||||| ||
Sbjct  497  ATTTGAAAGTCATGGCGGGTCGATGTGAAGGACTAAGTAGCAGGCTTGGTTTGGAGACTC  556

Query  563  TAGCTCATGAGTTAGAACTTAACCGTGTTGGTACTGCACACCATGCCGGTTCGGATAGA-  621
            |||| |||||||| | ||||||||||||||||||||||||||| ||||||||  ||| | 
Sbjct  557  TAGCGCATGAGTTCGGACTTAACCGTGTTGGTACTGCACACCACGCCGGTTCCAATA-AC  615

Query  622  GAATTAACGGCTCAAA-TTTTCGCTAAG  648
            || ||||||||  |   |||||||||||
Sbjct  616  GAGTTAACGGCG-ATGGTTTTCGCTAAG  642



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44356751801


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5